Gene detail

Detailed information of ENSQNNP00000020187.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: XP_047125332.1, nephrocystin-3 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Sequence

CDS

ENSQNNT00000020916

ATGGGCAACAAGTTATCAAGGAAAAAGACAACAAAAAATCGAGTTTCTAATTCGACTCGTAGTCCCAAGATTGAATCTTTGGAGATGGAGAACAACTCGGAAGAAATTCATGTGCCAGATACTACCACCAAACACAAAACAAAGACCACATCGCTTTTaccatttaaaaagaagagtCTAAGCATCCAAAAGACGACTAGTTTCCAGTCTGCTGTGACTTACCCAAATAGAAATCTTGAAGTTGAGAGATTACTGCGACTTATAGAGAAACTCAAAGCCGGGCATGAGAACCAgataattgaaattgaaatggAGAAGAAGCAATTAGTAATGGAGGTCACACGTCTCAGAAATGAAGTCAAAATGTTAAACACTGAGCTACCGAAATTGCGGGCTGATAAACAAAAGGCTAAAGGTGCTGAGAGCGATGCTTTGGAAAGGGCAACCTCCATAAAGTCTGAAAAAGACAAGATTCAACATCAGTTCAAATTGTTTCAAGAGACAAGCGAAAAGGAAATACAAAGAATTCTGTATGAAAACCAAAAATTTCTGGCTCTACTGCAGAAGTATACAGATGTGAGTGAAATTCGCAGTAGCACTGGCCACATGCAACACCTCATCACTGATTGGTTGTTTGCCAGCCAATCAGATACAGAGGTCGGTAATGCGCGGCAGCTGAAAAGACTAGACAGTATTCCAGTGAGCGAAATGATGGGCCTGGTTGATGCTAAACCCAACAAAGATATCAGTGATGTCCTACAACAGACTCTTGCTTCTTTATATAAACTTTGGTTTGGCGTGCCAGCTGGTAATGTTTATAATGTGTTTGTGAAGCATCATGAAGAAATGTCCGAGTTCATAAAGCTGTTAAAATTTGGATTCTACAATCTCTCGTTGCAATGTGAAATGGAGGCGCGCTTTTTTAACTACTTTTTCTGTGaagttgaaaacaaaacaaagGATGATGCATCGAAAGAATTCTTTGATACTTGTGACGTTGTTTTAATTATCCAGTCCAGTTCGTATCAAATAGCTAAGGATACCGTGGAGAAGATGCTGAAAGCTGGAAAAATATGCATAGTCGCAGGAGCCTCGAtCGGTGACTCCATTGGGACTCTGATTAAAGATAATCGCAAGCTTTACGTTGTTCAAGAGACGACAGAGCAGTCAAAGATGGTGGAAAGTTGTGTAAAAGAATGCTCAAAGATATGCAAGATGtttttggaGAAACAACGAGTGGTCTCAAGTCACATTGACGACAACAACGAGCTGTCGACATTACCGTTACAATGTTGGGATTTATGCAATCACCTTGAACAGAAAGCCATTCGAAATTATCAGAGTAGTTCGAAAGTTCTACACATGAACATTGATAACGAGTTAGTCTACCTTGATAATTATATTACGCAAGACGGCCCCGTACAGCCGCTGTTGGTGTGCGGGCCAGTTGGTTCTGGCAAGTCGTTTCTCCTATCGAATTGGGTTGAACACTTGGAGAATTCTCTAATAAACGCTTGTGTGCTCAGTCACTCAGTGGTGGTTGGCTCGATGAACAGCAAATGTCCTGTTCAACTTCTACGCAGGTTTTCGCATATCCTTCTCGGACAGCTGCCACCATCATGCaaggaaaattttttaaagaaagagtTTCCAGTGTGGTTGGATCGTTCGTGCCAGAAATACAAAAACGGCGTGGTGATTGTTATAGATGGCACGGATTTGTTGGACAAACATGCAGAGTACCTGAAATGGCTACTTGATCCGCTACCTATCCATGTGCGGGTTGTTATTGCGGTTAACAGTCGAAATTTCCCCAAAGTTTGGTCTAAATGGCCCGTGCTGGAGATCAAGGGATGTTTTGATACAGGCATGCAACATTTCAAGGATATCCTCCCTCAAAATCTGGCTGACATATTAGATGAAACGCTATCAAAGACCTACCCTGACAATGTGTACAATAAATCTGTCTCAAATAATTTATCTAGTCTTTTATTCCATGATCTCTTTGTGTCTGCTCTGAAATATATTAACAATGATTTTTCTGCGCTTCTTAACCAATCACTAAACACTTTGAATATCAAGCAGATGTTCGTGCTGATTATACAGCTGTTTGCGACAAAATACGGTGAAATTGTGGGAACTGTATTGAAATCACTTGCTCTCTCTTGTAATGGGTTGAGCTTTGGAGAGCTATTGGAATATTGCGAAGGCAGTTTGCAATGTGAACTTTATCATGTGCTACACGTGGCTGTAAGGTTGCATTTGGTGTGGCAGATGTGTGGCTTATACCAGATATCCAGATTACAGGTACTAGAAGCCATATACAGCTACTACAACTTGAAAGATTCAGAGGATAGTGCGCGCGTGATACACAAATCgctttcaaatttatttttgaagaaattcGAAGGCGGTTTTGTCACCTATCGTGTTGCTGATGAGTTACCATGGCAACTAAAGCAAGCGAATCTACGGCAAGAGTTGCGCTCGTGTTTGGAATCGTTCACCGTGTTTTTCCATCACTGGCAGAAAGGCAAGCTGTTGGCGTTGGTAGAATATTGGAAATGGTTGAATGTGAATATCACCGCCGTTCATGAAATATACACAAACAAACTGAAGATGCTAGAACGTAATGTCGAGCAGAATCAAGAGTTGCTATTCACCTACGATACCTTAGGTGAGTTTATGCAGGAATACAGTGAATACAAACACGCGCAACATTCGTTTGAACGGGCGTTAGAGCTGAAAGAGTTGCATCTTGAATCCGACAGCTTGCCAATCGGTGAATCGTTTCTACGCCTTGCTAAATTGTTCACCCAGTGGGGGAAATTCCAGACCGCCGAGAATTACTTCCAGCAAGTCATTCAGATCAACGCGACGCATAAAGACGAGGTGAAATATATCAATATACTGGAACCGCTGGCTGTTTTGTACTTGCATCAGGGCAGACTTGAAGATGCGAACTTATGTCGAAAGCAGGTGAATAGCATACGCCAGCGTCATGTGCACGAAGCGAAGAATTTGAAGGAGAAAGCAAAGGAATGTCATTCTCTTTCGCAGATGTTGATAAAAGAAGAACTGGACGAAAAAAACATTGAGTTTTTAGTGGATGTTGGTACGGTGTACTTTAACCTGGAGATGCACGAAGAAGCGGTTAACATTTTGTATCAAGCATTGGAAACGTACAAACGATTATTTGGTGCTAATCATCCTTTAACAGCAGATGTTATGTGCAAGCTCAGCTTTGTTTACCAATCGCAGAATCTACTTGACAAAGCTCTGCCTTTGTTAGAGAAAGCATATGAGGTGTTTTTGGTGAGCTATCCGGTCGATAGCGTCAATGTGCAAGATGCTGTAAAGAATCTCACGAAAATCTTCAAGAAACAGCAAAAGTTTGACCAATTGGAACAGTTCTATCGAAATCTGATTGATTTTCAAGAACAACAGAATGTGTCAACGTCAACTTATGCTGCGTCGCTTAATGTTCTCGCTGTCCACCTCAGCAAACTTGAACGGTACGATGAGGCGTTAGACCTTTACCACAGGTCGTTACAGGCTTACACAACCCATGTTTCGTTTGATCATTCATCAATCACCGATATACTCAGCAACATGGCGAAAAGTTACTACGGTCAAGGGGATATGGATACGGCCGCACATATGTACAAGTTGTCCATGGATCCGAATCGCACAATGAGTCAACTCTCCTCTTCATCCGAAGCCTCTGCAAAACCATAG

Transcript

ENSQNNT00000020916

ACAGTGATAATATTAAATACATAATGGGCAACAAGTTATCAAGGAAAAAGACAACAAAAAATCGAGTTTCTAATTCGACTCGTAGTCCCAAGATTGAATCTTTGGAGATGGAGAACAACTCGGAAGAAATTCATGTGCCAGATACTACCACCAAACACAAAACAAAGACCACATCGCTTTTaccatttaaaaagaagagtCTAAGCATCCAAAAGACGACTAGTTTCCAGTCTGCTGTGACTTACCCAAATAGAAATCTTGAAGTTGAGAGATTACTGCGACTTATAGAGAAACTCAAAGCCGGGCATGAGAACCAgataattgaaattgaaatggAGAAGAAGCAATTAGTAATGGAGGTCACACGTCTCAGAAATGAAGTCAAAATGTTAAACACTGAGCTACCGAAATTGCGGGCTGATAAACAAAAGGCTAAAGGTGCTGAGAGCGATGCTTTGGAAAGGGCAACCTCCATAAAGTCTGAAAAAGACAAGATTCAACATCAGTTCAAATTGTTTCAAGAGACAAGCGAAAAGGAAATACAAAGAATTCTGTATGAAAACCAAAAATTTCTGGCTCTACTGCAGAAGTATACAGATGTGAGTGAAATTCGCAGTAGCACTGGCCACATGCAACACCTCATCACTGATTGGTTGTTTGCCAGCCAATCAGATACAGAGGTCGGTAATGCGCGGCAGCTGAAAAGACTAGACAGTATTCCAGTGAGCGAAATGATGGGCCTGGTTGATGCTAAACCCAACAAAGATATCAGTGATGTCCTACAACAGACTCTTGCTTCTTTATATAAACTTTGGTTTGGCGTGCCAGCTGGTAATGTTTATAATGTGTTTGTGAAGCATCATGAAGAAATGTCCGAGTTCATAAAGCTGTTAAAATTTGGATTCTACAATCTCTCGTTGCAATGTGAAATGGAGGCGCGCTTTTTTAACTACTTTTTCTGTGaagttgaaaacaaaacaaagGATGATGCATCGAAAGAATTCTTTGATACTTGTGACGTTGTTTTAATTATCCAGTCCAGTTCGTATCAAATAGCTAAGGATACCGTGGAGAAGATGCTGAAAGCTGGAAAAATATGCATAGTCGCAGGAGCCTCGAtCGGTGACTCCATTGGGACTCTGATTAAAGATAATCGCAAGCTTTACGTTGTTCAAGAGACGACAGAGCAGTCAAAGATGGTGGAAAGTTGTGTAAAAGAATGCTCAAAGATATGCAAGATGtttttggaGAAACAACGAGTGGTCTCAAGTCACATTGACGACAACAACGAGCTGTCGACATTACCGTTACAATGTTGGGATTTATGCAATCACCTTGAACAGAAAGCCATTCGAAATTATCAGAGTAGTTCGAAAGTTCTACACATGAACATTGATAACGAGTTAGTCTACCTTGATAATTATATTACGCAAGACGGCCCCGTACAGCCGCTGTTGGTGTGCGGGCCAGTTGGTTCTGGCAAGTCGTTTCTCCTATCGAATTGGGTTGAACACTTGGAGAATTCTCTAATAAACGCTTGTGTGCTCAGTCACTCAGTGGTGGTTGGCTCGATGAACAGCAAATGTCCTGTTCAACTTCTACGCAGGTTTTCGCATATCCTTCTCGGACAGCTGCCACCATCATGCaaggaaaattttttaaagaaagagtTTCCAGTGTGGTTGGATCGTTCGTGCCAGAAATACAAAAACGGCGTGGTGATTGTTATAGATGGCACGGATTTGTTGGACAAACATGCAGAGTACCTGAAATGGCTACTTGATCCGCTACCTATCCATGTGCGGGTTGTTATTGCGGTTAACAGTCGAAATTTCCCCAAAGTTTGGTCTAAATGGCCCGTGCTGGAGATCAAGGGATGTTTTGATACAGGCATGCAACATTTCAAGGATATCCTCCCTCAAAATCTGGCTGACATATTAGATGAAACGCTATCAAAGACCTACCCTGACAATGTGTACAATAAATCTGTCTCAAATAATTTATCTAGTCTTTTATTCCATGATCTCTTTGTGTCTGCTCTGAAATATATTAACAATGATTTTTCTGCGCTTCTTAACCAATCACTAAACACTTTGAATATCAAGCAGATGTTCGTGCTGATTATACAGCTGTTTGCGACAAAATACGGTGAAATTGTGGGAACTGTATTGAAATCACTTGCTCTCTCTTGTAATGGGTTGAGCTTTGGAGAGCTATTGGAATATTGCGAAGGCAGTTTGCAATGTGAACTTTATCATGTGCTACACGTGGCTGTAAGGTTGCATTTGGTGTGGCAGATGTGTGGCTTATACCAGATATCCAGATTACAGGTACTAGAAGCCATATACAGCTACTACAACTTGAAAGATTCAGAGGATAGTGCGCGCGTGATACACAAATCgctttcaaatttatttttgaagaaattcGAAGGCGGTTTTGTCACCTATCGTGTTGCTGATGAGTTACCATGGCAACTAAAGCAAGCGAATCTACGGCAAGAGTTGCGCTCGTGTTTGGAATCGTTCACCGTGTTTTTCCATCACTGGCAGAAAGGCAAGCTGTTGGCGTTGGTAGAATATTGGAAATGGTTGAATGTGAATATCACCGCCGTTCATGAAATATACACAAACAAACTGAAGATGCTAGAACGTAATGTCGAGCAGAATCAAGAGTTGCTATTCACCTACGATACCTTAGGTGAGTTTATGCAGGAATACAGTGAATACAAACACGCGCAACATTCGTTTGAACGGGCGTTAGAGCTGAAAGAGTTGCATCTTGAATCCGACAGCTTGCCAATCGGTGAATCGTTTCTACGCCTTGCTAAATTGTTCACCCAGTGGGGGAAATTCCAGACCGCCGAGAATTACTTCCAGCAAGTCATTCAGATCAACGCGACGCATAAAGACGAGGTGAAATATATCAATATACTGGAACCGCTGGCTGTTTTGTACTTGCATCAGGGCAGACTTGAAGATGCGAACTTATGTCGAAAGCAGGTGAATAGCATACGCCAGCGTCATGTGCACGAAGCGAAGAATTTGAAGGAGAAAGCAAAGGAATGTCATTCTCTTTCGCAGATGTTGATAAAAGAAGAACTGGACGAAAAAAACATTGAGTTTTTAGTGGATGTTGGTACGGTGTACTTTAACCTGGAGATGCACGAAGAAGCGGTTAACATTTTGTATCAAGCATTGGAAACGTACAAACGATTATTTGGTGCTAATCATCCTTTAACAGCAGATGTTATGTGCAAGCTCAGCTTTGTTTACCAATCGCAGAATCTACTTGACAAAGCTCTGCCTTTGTTAGAGAAAGCATATGAGGTGTTTTTGGTGAGCTATCCGGTCGATAGCGTCAATGTGCAAGATGCTGTAAAGAATCTCACGAAAATCTTCAAGAAACAGCAAAAGTTTGACCAATTGGAACAGTTCTATCGAAATCTGATTGATTTTCAAGAACAACAGAATGTGTCAACGTCAACTTATGCTGCGTCGCTTAATGTTCTCGCTGTCCACCTCAGCAAACTTGAACGGTACGATGAGGCGTTAGACCTTTACCACAGGTCGTTACAGGCTTACACAACCCATGTTTCGTTTGATCATTCATCAATCACCGATATACTCAGCAACATGGCGAAAAGTTACTACGGTCAAGGGGATATGGATACGGCCGCACATATGTACAAGTTGTCCATGGATCCGAATCGCACAATGAGTCAACTCTCCTCTTCATCCGAAGCCTCTGCAAAACCATAGACAACTGTGTTGACTTATCAagacaacatattttatataaacaaagtttttatacGTATAGCTAATTTatgactttttaaatttatttggtGAATGTAtttagaaacaattttttcattattacaACATTGtcaatttaaatgtt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z494	Nephrocystin-3 OS=Homo sapiens OX=9606 GN=NPHP3 PE=1 SV=1
Q6AZT7	Nephrocystin-3 OS=Xenopus laevis OX=8355 GN=nphp3 PE=2 SV=1
Q7TNH6	Nephrocystin-3 OS=Mus musculus OX=10090 GN=Nphp3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003647 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13401 all species →	AAA_22	AAA domain	Domain	Interproscan
PF17874 all species →	TPR_MalT	MalT-like TPR region	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR051787 all species →	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR049945 all species →	Domain	ORC1/DEAH AAA+ ATPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19360	NPHP3; nephrocystin-3	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.