Genomic Location: chr1:19540439...19558972
NR annotation: XP_028516141.1, uncharacterized protein LOC110243490 [Exaiptasia diaphana]
Species Candelabrum cocksii · all data for this species · gene families
| CDS |
| ENSQNNT00000020960 |
| Transcript |
| ENSQNNT00000020960 |
| Protein |
| ENSQNNP00000020231.1 |
| UniProt accession | Description |
|---|---|
| A0A1U8QWA2 | Glycine betaine reductase ATRR OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=ATRR PE=1 SV=1 |
| Q70LM4 | Linear gramicidin synthase subunit D OS=Brevibacillus parabrevis OX=54914 GN=lgrD PE=1 SV=1 |
| B8N0E8 | Nonribosomal peptide synthetase asaC OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=asaC PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002095 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00501 all species → | AMP-binding | AMP-binding enzyme | Family | Interproscan |
| PF07993 all species → | NAD_binding_4 | Male sterility protein | Family | Interproscan |
| PF00106 all species → | adh_short | short chain dehydrogenase | Domain | Interproscan |
| PF13193 all species → | AMP-binding_C | AMP-binding enzyme C-terminal domain | Domain | Interproscan |
| PF00550 all species → | PP-binding | Phosphopantetheine attachment site | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000873 all species → | Domain | AMP-dependent synthetase/ligase domain | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR013120 all species → | Domain | Fatty acyl-coenzyme A reductase, NAD-binding domain | Interproscan |
| IPR002347 all species → | Family | Short-chain dehydrogenase/reductase SDR | Interproscan |
| IPR010080 all species → | Domain | Thioester reductase-like domain | Interproscan |
| IPR025110 all species → | Domain | AMP-binding enzyme, C-terminal domain | Interproscan |
| IPR042099 all species → | Homologous_superfamily | ANL, N-terminal domain | Interproscan |
| IPR006162 all species → | PTM | Phosphopantetheine attachment site | Interproscan |
| IPR045851 all species → | Homologous_superfamily | AMP-binding enzyme, C-terminal domain superfamily | Interproscan |
| IPR036736 all species → | Homologous_superfamily | ACP-like superfamily | Interproscan |
| IPR009081 all species → | Domain | Phosphopantetheine binding ACP domain | Interproscan |
| IPR020904 all species → | Conserved_site | Short-chain dehydrogenase/reductase, conserved site | Interproscan |
| IPR020845 all species → | Conserved_site | AMP-binding, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR44845 all species → | CARRIER DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
ENSQNNP00000020231.1.Genes whose expression across the transcriptome samples of Candelabrum cocksii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Candelabrum cocksii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
