Gene detail

Detailed information of ENSQNNP00000020656.1 in Candelabrum cocksii

Genomic Location: chr15:8045464...8064104
NR annotation: XP_032221277.2, dynein regulatory complex subunit 6 [Nematostella vectensis]
Species Candelabrum cocksii · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSQNNT00000021409

ATGTCTTATCTCCGGGACAGCTGCAACAAGGAATTACACAGTTATCTCGAAAAGCATTGTTTGCCAAGTATCTTTGAGAGTATTTTTACTGCACTCACTGTCAACCAGCCAGCAGATGGTGCTTTGTTTATGTTGGAGAAACTTCAACTACTGAAAAACAATCCACAATTGCTGGAGACATTACAATGGGACACATTTATAGATGAGGATAAGAAACCTTTAAACCAGGCAAAACACATCAGTCTTGAATGGTCTGATGAAAAACACATTCCGAGTATCGACATGCTGGAGAAGGCTTACTCATTCTACAACACAAAACTACTCAAATTTGCTTTCAGAACCCTGCATTTAAACTGGATATTGTCACTAAAACAAAAGGCCACACTGAAGAAAAAGCAAGCCATTGCTGCAGAGTTCCATTGCAACAGTCTTCTGAAATATTATCTCAAATTCTGGAAGAAATGGGTGATGAATGCAAATGACATCAAAGTAAAGTTTCTGGTCATCTTAGATCGGCTATTCTCGGAATCATTGAAGcgttgtgtttttaaaaggtgGCACAAAATGGCAGTCGAGTCCATAAAAGCTAAGGAATACTTCAAACGAATCGAGAAAGGGGAAAGAGCCAATgctaaaattatcaaaatatgcAAAGACGATCACATTTCCTTATTGCCCAAACAAGTGGCCATCAATATCTTTCGTTTTGTTGATTTGATTGACCTTGTCAATTGTTCGAAAGTTTGTAGACAGTGGAAAGAGATCACGCAAGCTTCTATACTTTGGAGCTGGATTGATCTCTCAAATACAGATCATAGTCTTGTATCAAGCAAAGCTGTCACCAGTCTTCTACAGAAATGTCGTCCGTTTTTGTGTCATCTCAATATGAGGGCATGTCAATTTCTACTGCCAAAAGCATTAAAAGCAGTAGGTGATTGCCGTAACTTGCAGGATCTTAACATATCGCAATGCATTAATGTCAATGATGATGTTGTCAAGGAAATAACGTTGGGCTGTCTTTCcttgttttatttcaatgtgTCTCGGACTGACATATCAGATGCGTCTCTGCGATATCTCTCGAGAAACTGcaacaatattcaatatttGAACTTCTCTTACTGTGTCAACATTACTGATCGTGGTCTATACTATCTCTCAAGTGGGAAAGGTTCACAAAAGATCACCTACCTAGATATGTCGGGATGCGATCAGGTTTCAAAGATTGGTTTCAAGCACTTGGCGAAAGGTTGCATACGCTTAAACTCAATATTGCTGAATGAACTTCCCTCGCTCACTGATGAATGTGTTGAATCCATTACATCCGAATGCAAAAACCTGCGGGAGATCAGCTTAATTCATTCGCCAAACATAACCGATGCTTCTATAGAGAATTTCTCCGCTTCCAAGaaaattaaagttttaaaGCTGGAAGGCAACGACCGTTTGACGGACAAGTCGATAAAGATGTTAACAACACAGAGCACAGAACttcataatttatattttgttgacGTTCAGCGAACAACTGACTTGAGTTTGAAGGCTTTAGGAAGATGTAAGCACCTTGCTGTGCTAAACATGGCTGACTGCGTCAGACTGTCAGACTCTGGCGTTCGTTACATTATCGAGGGACAGTCAGGAACAAAACTACGAGAAATCAATTTTACCAACTGCATTCGTGTAAGTGATGTCTCGCTACTGCGCATGTCACAAAGATGTCGCTCATTAGCATATGCTAACTTCTCTTATTGTGAACTTATCACAGACGCGGGAGTAGAACTACTGGGAACTATTCCCACCCTCATATCGTTGGACCTTTCCGGATGTAGCATCGGGGACCCGGGCGTTGCCGCCTTAGGCAATAACCCCCGCTTCAAGGATCTAATTTTTTCCGAATGTTGTCTCATCACAGATATAGGTATACAGAAAATGGTTTCAAACCTTAAAGAATTGGACACCTTGGACTTATCACATGACAATTTACTAACAGATcaagttttaaaaagtgtGGCGTTCCATTGTCGACGTTTGAGAATTCTAAACATATGTGGATGCTCATTGGTCACGGACCAAGGTTTGCAATATTTGGCTGGCGTTTGCATGTTTCTAGAGAAACTCGACATCTCTGGTTGCAAATTCATAACcgATCGCAGTCTGAAGTACCTTCATAAAGGTTGCGAAAACATCACTACTTTAACCATGCTTTATTGCGCGGGGATATCCAAATACGGCGCAGTTAAGATGCAGAACAAGGTTAAGGGGAGAGTCATTCACAGCGAAGAGCACACTCGTATGTACCTGGGTAATCGATCCCTACGATGA

Transcript

ENSQNNT00000021409

TTATTTCAGCGTTTCATTATTGCTTAATTTAATGTGAAGCTCATCTTTCTAAAGGTTTCAAACCTACAAAAGTATGTGGAACATAAATATACCAATAATCCatttattattcattatttattgTAATAAACAAGTTTTCTACTTAAGCTAATCCATGTCATCAACAtatgcatttttttttataaatgatttaGTTGCgatgtttacaaaatatttttcatccCACAAACATTAAAGATGTCTTATCTCCGGGACAGCTGCAACAAGGAATTACACAGTTATCTCGAAAAGCATTGTTTGCCAAGTATCTTTGAGAGTATTTTTACTGCACTCACTGTCAACCAGCCAGCAGATGGTGCTTTGTTTATGTTGGAGAAACTTCAACTACTGAAAAACAATCCACAATTGCTGGAGACATTACAATGGGACACATTTATAGATGAGGATAAGAAACCTTTAAACCAGGCAAAACACATCAGTCTTGAATGGTCTGATGAAAAACACATTCCGAGTATCGACATGCTGGAGAAGGCTTACTCATTCTACAACACAAAACTACTCAAATTTGCTTTCAGAACCCTGCATTTAAACTGGATATTGTCACTAAAACAAAAGGCCACACTGAAGAAAAAGCAAGCCATTGCTGCAGAGTTCCATTGCAACAGTCTTCTGAAATATTATCTCAAATTCTGGAAGAAATGGGTGATGAATGCAAATGACATCAAAGTAAAGTTTCTGGTCATCTTAGATCGGCTATTCTCGGAATCATTGAAGcgttgtgtttttaaaaggtgGCACAAAATGGCAGTCGAGTCCATAAAAGCTAAGGAATACTTCAAACGAATCGAGAAAGGGGAAAGAGCCAATgctaaaattatcaaaatatgcAAAGACGATCACATTTCCTTATTGCCCAAACAAGTGGCCATCAATATCTTTCGTTTTGTTGATTTGATTGACCTTGTCAATTGTTCGAAAGTTTGTAGACAGTGGAAAGAGATCACGCAAGCTTCTATACTTTGGAGCTGGATTGATCTCTCAAATACAGATCATAGTCTTGTATCAAGCAAAGCTGTCACCAGTCTTCTACAGAAATGTCGTCCGTTTTTGTGTCATCTCAATATGAGGGCATGTCAATTTCTACTGCCAAAAGCATTAAAAGCAGTAGGTGATTGCCGTAACTTGCAGGATCTTAACATATCGCAATGCATTAATGTCAATGATGATGTTGTCAAGGAAATAACGTTGGGCTGTCTTTCcttgttttatttcaatgtgTCTCGGACTGACATATCAGATGCGTCTCTGCGATATCTCTCGAGAAACTGcaacaatattcaatatttGAACTTCTCTTACTGTGTCAACATTACTGATCGTGGTCTATACTATCTCTCAAGTGGGAAAGGTTCACAAAAGATCACCTACCTAGATATGTCGGGATGCGATCAGGTTTCAAAGATTGGTTTCAAGCACTTGGCGAAAGGTTGCATACGCTTAAACTCAATATTGCTGAATGAACTTCCCTCGCTCACTGATGAATGTGTTGAATCCATTACATCCGAATGCAAAAACCTGCGGGAGATCAGCTTAATTCATTCGCCAAACATAACCGATGCTTCTATAGAGAATTTCTCCGCTTCCAAGaaaattaaagttttaaaGCTGGAAGGCAACGACCGTTTGACGGACAAGTCGATAAAGATGTTAACAACACAGAGCACAGAACttcataatttatattttgttgacGTTCAGCGAACAACTGACTTGAGTTTGAAGGCTTTAGGAAGATGTAAGCACCTTGCTGTGCTAAACATGGCTGACTGCGTCAGACTGTCAGACTCTGGCGTTCGTTACATTATCGAGGGACAGTCAGGAACAAAACTACGAGAAATCAATTTTACCAACTGCATTCGTGTAAGTGATGTCTCGCTACTGCGCATGTCACAAAGATGTCGCTCATTAGCATATGCTAACTTCTCTTATTGTGAACTTATCACAGACGCGGGAGTAGAACTACTGGGAACTATTCCCACCCTCATATCGTTGGACCTTTCCGGATGTAGCATCGGGGACCCGGGCGTTGCCGCCTTAGGCAATAACCCCCGCTTCAAGGATCTAATTTTTTCCGAATGTTGTCTCATCACAGATATAGGTATACAGAAAATGGTTTCAAACCTTAAAGAATTGGACACCTTGGACTTATCACATGACAATTTACTAACAGATcaagttttaaaaagtgtGGCGTTCCATTGTCGACGTTTGAGAATTCTAAACATATGTGGATGCTCATTGGTCACGGACCAAGGTTTGCAATATTTGGCTGGCGTTTGCATGTTTCTAGAGAAACTCGACATCTCTGGTTGCAAATTCATAACcgATCGCAGTCTGAAGTACCTTCATAAAGGTTGCGAAAACATCACTACTTTAACCATGCTTTATTGCGCGGGGATATCCAAATACGGCGCAGTTAAGATGCAGAACAAGGTTAAGGGGAGAGTCATTCACAGCGAAGAGCACACTCGTATGTACCTGGGTAATCGATCCCTACGATGAGTCTTTAGTTACGATAAGAAAACTGATTTTCTCGTATTCTGGTCCGTAAATTGGTTGTTTATAACGTATTAAACTATTTTTCCTATAttttagatttataaaaaGAGTCTGCTTGTTTATATGCTCTGGTTAATTGTATATAAAGGTTATATTTTTGCATCTTTAACAATAAGATTGTTAATATGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CDU4	F-box and leucine-rich repeat protein 13 OS=Mus musculus OX=10090 GN=Fbxl13 PE=1 SV=2
Q8NEE6	F-box and leucine-rich repeat protein 13 OS=Homo sapiens OX=9606 GN=FBXL13 PE=1 SV=3
C0HAC0	F-box/LRR-repeat protein 5 OS=Salmo salar OX=8030 GN=fbxl5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004479 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR050648 all species →	Family	F-box/Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382 all species →	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10279	FBXL13, DRC6; dynein regulatory complex subunit 6	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.