Genomic Location: chr2:14106630...14108441
NR annotation: XP_047125245.1, orotidine 5'-phosphate decarboxylase [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families
| CDS |
| ENSQNNT00000021603 |
| Transcript |
| ENSQNNT00000021603 |
| Protein |
| ENSQNNP00000020845.1 |
| UniProt accession | Description |
|---|---|
| Q42942 | Uridine 5'-monophosphate synthase (Fragment) OS=Nicotiana tabacum OX=4097 GN=PYR5-6 PE=2 SV=1 |
| P13439 | Uridine 5'-monophosphate synthase OS=Mus musculus OX=10090 GN=Umps PE=1 SV=3 |
| Q42586 | Uridine 5'-monophosphate synthase OS=Arabidopsis thaliana OX=3702 GN=PYRE-F PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007636 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00215 all species → | OMPdecase | Orotidine 5'-phosphate decarboxylase / HUMPS family | Domain | Interproscan |
| PF00156 all species → | Pribosyltran | Phosphoribosyl transferase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004467 all species → | Domain | Orotate phosphoribosyl transferase domain | Interproscan |
| IPR013785 all species → | Homologous_superfamily | Aldolase-type TIM barrel | Interproscan |
| IPR001754 all species → | Domain | Orotidine 5'-phosphate decarboxylase domain | Interproscan |
| IPR014732 all species → | Family | Orotidine 5'-phosphate decarboxylase | Interproscan |
| IPR000836 all species → | Domain | Phosphoribosyltransferase domain | Interproscan |
| IPR018089 all species → | Active_site | Orotidine 5'-phosphate decarboxylase, active site | Interproscan |
| IPR029057 all species → | Homologous_superfamily | Phosphoribosyltransferase-like | Interproscan |
| IPR023031 all species → | Family | Orotate phosphoribosyltransferase | Interproscan |
| IPR011060 all species → | Homologous_superfamily | Ribulose-phosphate binding barrel | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19278 all species → | OROTATE PHOSPHORIBOSYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004588 all species → | Molecular Function | orotate phosphoribosyltransferase activity | Interproscan |
| GO:0004590 all species → | Molecular Function | orotidine-5'-phosphate decarboxylase activity | Interproscan |
| GO:0006207 all species → | Biological Process | 'de novo' pyrimidine nucleobase biosynthetic process | Interproscan |
| GO:0044205 all species → | Biological Process | 'de novo' UMP biosynthetic process | Interproscan |
| GO:0006222 all species → | Biological Process | UMP biosynthetic process | Interproscan |
| GO:0019856 all species → | Biological Process | pyrimidine nucleobase biosynthetic process | Interproscan |
| GO:0006221 all species → | Biological Process | pyrimidine nucleotide biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13421 | UMPS; uridine monophosphate synthetase | EC:2.4.2.10 EC:4.1.1.23 | Drug metabolism - other enzymes | ko00983 | deepkoala |
Genes whose expression across the transcriptome samples of Candelabrum cocksii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Candelabrum cocksii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
