Gene detail

Detailed information of ENSQNNP00000022760.1 in Candelabrum cocksii

Genomic Location: :...
NR annotation: XP_012559874.1, non-POU domain-containing octamer-binding protein isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSQNNT00000023573

ATGTGCGAAAAGCAGAATTGCTCTCTTTCGTTAGAAAACTTGAATCCGGTTATGCATCGTGGTGGACACCGAAAATCTCCTGAACAAAAGCAATCTTACAGgtatttaaaaaaagaatcaagTGATTGGAAACCATACTCCAAATCCACCCCTGAGAAACCATCAGGAAGCAATGAGGAGATGTCTTCCTCTGTGCAACCTACTGCAAAAGATGATTCTGTCAATGGTACATCAGCTAGTTCCTTAGATAAAAGTGTTTTACCTGAAACAAGtgaccaaccaatcaaaattgaAGAGAAACCACTTGAACGAAGGCGAGAACATTTTCCATACACAGGAAAGCAAGGAGAGAAGAAGTTTAGTGGGCGATGCCGCTTGTTCATCGCCAATATGAACAACAGTACAACAGAAGAGGACCTCAGGGACTTATTTTCACAATATGGAGAAGCTGGAGAGGTTTATGTCAATAACCAAAAAGGCTTTGGTTTTATAAGGCTGGACTACAGACATAATGCTGAAGTTGCAAAAAGTTGCTTGGACAAGAAGATGTTTAAAGGCAGAATGATTCAAGTGCGCTTTGCAACGCATGCTTCTGCGATTGAGTTACATGGACTCGATCATTATGCGTCAAATGAATACATTGCTGAAGCAATGAGCCAGTTTGGGAATGTCGAGCGAGTTGTTGTGGTTTGTGATGATAGAGGTAACCCCAAAGGGCATGCCATTGTCGAGTTTGAATGGAAAAAATCGGCCCAAAAAGTTATGGATCGCTTTAAAGAGGAGATGTTTGTTTTGGGAAGGCTACCGAAGCCAGTGCTAGCAAAACCACTTACACAACGAGATGATGAAGAAGGAATTCATGAGTCCGATGTGAAAAAAGTACCAGGATATATGAATGAAAGAGATTTTGCAGCGCGTTTTATATCGCCAAGTTCATTTGAATATATATGGGCAAAAAAATGGCGTGACTTGTACATAGAGGAGGAAGATAAGAAAGCAAAGTTAGAGCAGGAATTACAGGATGCTAGATACCgtcttgaaaatgaaatggagCATGCTCTACGACAACAAGAGGCTGGTAGAATCAGAGAAGAGTTGATGCATCGTCAAGAGGAGCTTCGTAAACTTGAAGAAGATTTGCAGCGAAGATCAACATTGCATTTAAGCAACTCGCGCCCTCCCCCTTCACCCCATCAAGACAGAAAGAGAGGATTTGAATCTCGTTCTCACATACCATCTCAGCGAAGGGAGAGTGGCATAGCTGAACCCCCTTCACAACGAAATCCTATTGGCATAAATAATGATGTTGCTCGTCAAAATGACATCATTCTTCATCAACAAGCAGAGTTGGAAATGAGGAGAGGGGAATTGTTAAGGGCAGCTGGCATGCCTGGAAACATTCTTCGTTTACCTCCACCAGACATCATGAGCCAGCAAAATAtgccacaaccacctcatggtcaaaTGATGCAACCAATTCCTGGCCTCCCTCCTGGTTTCATGCCTGGCCCACGAGGAATGCCCCCACCAGGTTTGCAAAGACCGCTGcGGCCTCCTTCTATGATGCCAGTAGGGCCTGGAGGTCCCATGCCTGGAAGAAACATGCCACCGCCGCGTGGCGCAGACAGATTTGTTGTTCATAAGAGACCTCGGCGcgattagaaataaacattgtgAACTATTAAAGAACCTGCTTTTAGTTGTTCGAACAATCTATATGTTAAACTGTGTTCAGTCATGAGTGGAACAATGCTGGAAACAGGTTTTCGGTTTAATGAAATGGtggatttattaaaattaggaCTTTCATGTTTTGGATGTTACTTTGGATGTACATCTGTCTTCACTGGTGCTAGAGTATGTTTTTATctattttagaaatttttatttctacttTTCAATGTATGAAAGGCATTTTATATACAGGGTTCATTTCTTTAATGACTTTCTACCACAGTGctttttcttgattttctCACTTgattgagatatttttaacttatGTAACTAGAATTTCTGTGTatgttaatatataatatacgcCTTATACTAAACCAATTTAGTTCTTGAATGCTTAGTGTTTTTTCGTGAAATATGCTCTTTCATTAATGTTTACGTCCCCCACAATATACTTATACAGTTGTATTGTTAAGTCAGTGTCAGAGCTAAGGGGTATGAGATATTTTCCTgtatcttttttacaaataaaacttaattaaaaacaatccCAATAACTTTTAATTGGTAAGTACCAACCAAGCTAGTACTACTAGGAATTTTTTATACTAGAAAACTACACAATTGTTGCATTAGCACTTTGATAGACTGACACATCAACAAAGTTTTTGAACTTGACATCAAATTTCTCTTGAACTTGATCAGCaaaaattttcatgttttttataaaccGGTATTGACGTTGTGAAGCTAGACCAGTTTGATCACTGTCCCTTTAAATTAAACATGTCTCCTTAAAAATGATcatatttggataaatttccTAAAATTGGGCTGAAAACTGATGCAATGCAATTGATAATTTGTTGAGCAAAGTTATTTATTCATAGAGGCCCATGGTATATTTATTGTAGTTGACccttttcatattttgatgTCTTTGCAAGTTGCATAGTATGCAAGCCAATTTGGACATTACCTATG

Protein

Uniprot

Uniprot term	Description
Q8VIJ6	Splicing factor, proline- and glutamine-rich OS=Mus musculus OX=10090 GN=Sfpq PE=1 SV=1
P23246	Splicing factor, proline- and glutamine-rich OS=Homo sapiens OX=9606 GN=SFPQ PE=1 SV=2
Q15233	Non-POU domain-containing octamer-binding protein OS=Homo sapiens OX=9606 GN=NONO PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08075	NOPS	NOPS (NUC059) domain	Domain	Interproscan
PF20566	Eap1	eIF4E-associated protein	Family	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012975	Domain	NOPS	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR046784	Family	eIF4E-associated protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13219	SFPQ, PSF; splicing factor, proline- and glutamine-rich	-	Spliceosome	ko03041	deepkoala