Gene detail

Detailed information of ENSQNNP00000023213.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: XP_047135874.1, elongator complex protein 2 [Hydra vulgaris]
Species abbreviation CCOCK · all data for this species · gene families

Sequence

CDS

ENSQNNT00000024054

ATGGAACTGTGTAGACTTTTATTCCTCTCCACTGGATGTAACCGTACGCCGCATGTTTTGTCGTGGGGAAGTAATGGCCTAATTGCGTTTGGCGGTTGCAACTCGGTGTATGTCTATTGCCCAATGGTGGGTAAGAAGATAATCGCTACATTGAATGGGCATTCATCACGCGTCAATTGCACTTGTTGGATCAATGACAATGaacTGGTCTCTGGTTCCACTGACAAAACATCTATCATTTGGACACGCACCAAAGGAAATAAATGGGTTGTAAAGCAACGGCTGACTGGCCACACAAATGCTGTAGTTGCCGTAGCAGCATGTAACTATGACAATAAAGCAGTTGTTGCTACTAGCAGTTCTGATTCATCTGTAAAAGTTTGGTTGTCAAAGACACAAGAGTATACGCTCCTCACCACATTACTCTTTGGCTCTGGTTTCGCTTTATCATTAGCAATGAGACACTTATCATCAACAAGTGGTGTATTATTGGCGTGCGGATGTGATGACTGTTCTATAAAACTCTACACCAACATCTCAGATGATATAAACGAGCCGGGGCAGTTCAAACAGGTTTTAACATTGAAAGGTCACGAGGACTGGATACAGTGTTTATCGTTTACAAGAAAAGGTGATGGTATTCTATTGGCAAGTGGCTCACAAGACAGTTACATACGATTGTGGAGTGTAACCACCACAAATCAAACATTACCAGTGGACACACTGACtgtgaaaaaacaaacatttaaagcTGATGATAAAGAGTACACTGTTACATTGGAATCTGTTTTGATTGGTCACGATAATTGGGTTTATGGCCTCTCGTGGTATAACAGAAAtgATGATGCAATATTGCTGTCAGCCAGTATGGACCGGAGTCTGATTGTTTGGCAGTATGATGAAGAAAGCCAAGTTTGGGTTGATAAGGCTCGGATGGGTGACGTAGGCGGAAACACTTTAGGCTTTTACGGTTGCGCGATCTCACCATGTGGTACCAAACTAGTTGCTCATGGTTACCAAGGTGCATTGCAAATGTGGGACAGACGTTCCGATGATTTCTGTGTATGGAAACCAGACATCACAATCACTGGACACTTTGAGAGTGTTGAGGATTTTGACTGGGACCCAGAAGGCTTGTTCTTCATCAGCACAAGTGTTGATCAAACTACACGATTGTTTGCACCCTGGCTACAAAAACATAAGGAGAGCTGGTATGAGATAGCTCGCCCTCAGATACATGGCTACGATATGAAGTGCGTTGCAATGCTCAACAGGTACACGTTTGCTGCATGTGCCCAAGAAAAGATTACCCGCGTGTTCTCAGCTCCAAAAGCCTTCCACGAAACACTCTCACACATATGCAATGTGCAGTGCCCTAATGAGACGCTATCGGCTGCACCCTTAGGAGCTACTATACCGGTTTTAGGCCTTTCGAACAAGGCTGTATATCAAGACGACCTTGAAAGTTGGCATAAAAACGAAGCTGAGAATGCACCGATCAAAGCGTCAACGTTTGCAAATGATGATCCCGCCCCGTTCAATCCAGCTGTCACAAAAGAGCCACCATTCGAGGATACGCTCCTGCAGAACACCCTTTGGCCTGAAGTCCACAAGTTATACGGGCATGGTTACGAGTTGTTCTGTTTAGCGGCCTCACCAAAAGGCGACGTTCTGGCAACGGCTTGCAAAGCAACAAAGCAGGAGCATGCTAAAATCCTGATATGGAACACCACGACGTGGGAAAAAATAGACAGTctaactgcgcatgcgttaACCGTGACCCAGCTCGCTTTTTCTCCCGACGGCCGTTTTTTGTTGTCGGTGTCGAGAGATCGGACATGGGCTGTCCATGAGCGCACTCACCCAAACTCGCTCTCCTTGCTCCAGAAGACAGATAAAAAGAGTAGCATTCATACACGTATCATTTGGTCGTGTGCGTGGTTTAACACACCCTGCTACTTTGCGACTGCGTCCAGGGATAAAAAGGTGATTGTGTGGAAACGCGATAAAGAGTGGTGCACACACGGTCCGGTTTTggagttgaaagaacctgcCACTGCGGTGTCCGTTGCCCATAGAAACCCAACTGACGGATGTCATTTGATTGCTGTTGGCATGGAAACGGGAGATATTCGCGTGTACACGTGGCACGAAGAATACAGTTGGCGGTTAATTATAGACGTTCCTAACAGTGTGTGTGCCACGTTGTCTATAAAACGTCTACGGTGGAGACCACATCCTCAACATTGGCATTTGGGCGTTGCTAGTAGCGACCACACGTGTCGTATTATTGCCATGTGCATAACTACCGCGGATGAGAATTGA

Transcript

ENSQNNT00000024054

AGACATTTAATAAAGTATAATGGAACTGTGTAGACTTTTATTCCTCTCCACTGGATGTAACCGTACGCCGCATGTTTTGTCGTGGGGAAGTAATGGCCTAATTGCGTTTGGCGGTTGCAACTCGGTGTATGTCTATTGCCCAATGGTGGGTAAGAAGATAATCGCTACATTGAATGGGCATTCATCACGCGTCAATTGCACTTGTTGGATCAATGACAATGaacTGGTCTCTGGTTCCACTGACAAAACATCTATCATTTGGACACGCACCAAAGGAAATAAATGGGTTGTAAAGCAACGGCTGACTGGCCACACAAATGCTGTAGTTGCCGTAGCAGCATGTAACTATGACAATAAAGCAGTTGTTGCTACTAGCAGTTCTGATTCATCTGTAAAAGTTTGGTTGTCAAAGACACAAGAGTATACGCTCCTCACCACATTACTCTTTGGCTCTGGTTTCGCTTTATCATTAGCAATGAGACACTTATCATCAACAAGTGGTGTATTATTGGCGTGCGGATGTGATGACTGTTCTATAAAACTCTACACCAACATCTCAGATGATATAAACGAGCCGGGGCAGTTCAAACAGGTTTTAACATTGAAAGGTCACGAGGACTGGATACAGTGTTTATCGTTTACAAGAAAAGGTGATGGTATTCTATTGGCAAGTGGCTCACAAGACAGTTACATACGATTGTGGAGTGTAACCACCACAAATCAAACATTACCAGTGGACACACTGACtgtgaaaaaacaaacatttaaagcTGATGATAAAGAGTACACTGTTACATTGGAATCTGTTTTGATTGGTCACGATAATTGGGTTTATGGCCTCTCGTGGTATAACAGAAAtgATGATGCAATATTGCTGTCAGCCAGTATGGACCGGAGTCTGATTGTTTGGCAGTATGATGAAGAAAGCCAAGTTTGGGTTGATAAGGCTCGGATGGGTGACGTAGGCGGAAACACTTTAGGCTTTTACGGTTGCGCGATCTCACCATGTGGTACCAAACTAGTTGCTCATGGTTACCAAGGTGCATTGCAAATGTGGGACAGACGTTCCGATGATTTCTGTGTATGGAAACCAGACATCACAATCACTGGACACTTTGAGAGTGTTGAGGATTTTGACTGGGACCCAGAAGGCTTGTTCTTCATCAGCACAAGTGTTGATCAAACTACACGATTGTTTGCACCCTGGCTACAAAAACATAAGGAGAGCTGGTATGAGATAGCTCGCCCTCAGATACATGGCTACGATATGAAGTGCGTTGCAATGCTCAACAGGTACACGTTTGCTGCATGTGCCCAAGAAAAGATTACCCGCGTGTTCTCAGCTCCAAAAGCCTTCCACGAAACACTCTCACACATATGCAATGTGCAGTGCCCTAATGAGACGCTATCGGCTGCACCCTTAGGAGCTACTATACCGGTTTTAGGCCTTTCGAACAAGGCTGTATATCAAGACGACCTTGAAAGTTGGCATAAAAACGAAGCTGAGAATGCACCGATCAAAGCGTCAACGTTTGCAAATGATGATCCCGCCCCGTTCAATCCAGCTGTCACAAAAGAGCCACCATTCGAGGATACGCTCCTGCAGAACACCCTTTGGCCTGAAGTCCACAAGTTATACGGGCATGGTTACGAGTTGTTCTGTTTAGCGGCCTCACCAAAAGGCGACGTTCTGGCAACGGCTTGCAAAGCAACAAAGCAGGAGCATGCTAAAATCCTGATATGGAACACCACGACGTGGGAAAAAATAGACAGTctaactgcgcatgcgttaACCGTGACCCAGCTCGCTTTTTCTCCCGACGGCCGTTTTTTGTTGTCGGTGTCGAGAGATCGGACATGGGCTGTCCATGAGCGCACTCACCCAAACTCGCTCTCCTTGCTCCAGAAGACAGATAAAAAGAGTAGCATTCATACACGTATCATTTGGTCGTGTGCGTGGTTTAACACACCCTGCTACTTTGCGACTGCGTCCAGGGATAAAAAGGTGATTGTGTGGAAACGCGATAAAGAGTGGTGCACACACGGTCCGGTTTTggagttgaaagaacctgcCACTGCGGTGTCCGTTGCCCATAGAAACCCAACTGACGGATGTCATTTGATTGCTGTTGGCATGGAAACGGGAGATATTCGCGTGTACACGTGGCACGAAGAATACAGTTGGCGGTTAATTATAGACGTTCCTAACAGTGTGTGTGCCACGTTGTCTATAAAACGTCTACGGTGGAGACCACATCCTCAACATTGGCATTTGGGCGTTGCTAGTAGCGACCACACGTGTCGTATTATTGCCATGTGCATAACTACCGCGGATGAGAATTGAGATTTTAATATGAAAGAGTCATGACAAATGCTATGATTTCCTACCCAAGAATAAGCTTTTTAAGCACAAATCGACGTCTTGTAATTGATGGAGAAATATTAGAAACGCGTGCTTGTCTtctctttgtttcttttaaaatgaaatttcatgAGTGACAGTAATTCGCCAATGTCTCTCAGGCAAATGATGTCATATCCGCGACGCCCGAGTGATGTCATATTCGTATGTTTATGTCCGAAcgacaatatatattttaaacgcTCGTTTGTTTGCGATTGAAAATGCATTGTTTTGTTGAATACATGGGGTTTTTATGCACAGAGGCGTTCTATTCAACAGTGGAATATATATCTCTAAACACCTCACGATAACGTTATCTCGAGAAGTTAATTAAATTCCGTCGCCTTTTGATGTGTTCAGGAGAAATTGGTGTCGTTTCTAGCGCGAGCGAGGGAACAATATCTTTTCAGAATAGACAGAAGGTTTTCACTTTGATATGAGGAAATTCGTTTGCGTAACGCCGCCAAAAAGAGTTGATTACAAACAGGCgctctttgttgttgttgtagggCTTAAGAATAACATCTGCTGATATTGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q05AM5	Elongator complex protein 2 OS=Danio rerio OX=7955 GN=elp2 PE=2 SV=1
Q6IA86	Elongator complex protein 2 OS=Homo sapiens OX=9606 GN=ELP2 PE=1 SV=2
Q91WG4	Elongator complex protein 2 OS=Mus musculus OX=10090 GN=Elp2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003111 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR037289 all species →	Family	Elongator complex protein 2	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44111 all species →	ELONGATOR COMPLEX PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0002098 all species →	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0033588 all species →	Cellular Component	elongator holoenzyme complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11374	ELP2; elongator complex protein 2	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.