Gene detail

Detailed information of ENSQNNP00000024329.1 in Candelabrum cocksii

Genomic Location: chr8:14207112...14214852
NR annotation: XP_047136745.1, limb region 1 protein homolog isoform X1 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSQNNT00000025241

aaaacagacTAAAGTTCAATCTGGCTAGTATTGCGAGAGCTTTAGGTCGGAAGCAGTATAATGGAATTGGAAGACTGATCTGTTAAGTAAAGCTGGCAGTGTAGACATTTATGCTTGTAATTGCATTGTATTGCAGTTTTAATAGCTTGTAGCCAGTCAGTCAGATTTGCTCAACAAGCACTTTAACAAGACTCGGAgctttaaagaaaatgttcaaattaatCATTACAAtgcaactttttgttttattattttctttcttatttttattttcatctcTCCACTTTTTGCACAGTCAgtacattaaaaacaaaatgcaagattttttatttgttgacgAAAACTCGGAGTTTGTGgacgaaaaatatttttacgaaTGGGTTCGACAGTACATTATATCTCTGCTAGCATTTATTTCTCTATACTTCACATCATACCTGGTGATTAaccaatttaaaaagaaaagcagaGAAGAAGagTATGAAGATGATTTGGTTTGTAGAGTTGCGGTGTGGCTCTGCTGCTTCACTATGGCTGTTTCGATTGGAGCCATTTTGTTGCTGCCGTTCTCAATCTTCAGCAATGAAATCTTACTTGCTTATCCAAACAGCTACTTAGTTATTTGGTTAAATGAGTCTTTGATACACGGATTATGGAACCAGATATTTTTGGGCACATACATTGCAATGTTCTTTGCGATGCCGTTTGCATGGTTCTTCACTGAGTCAGAAGGTTTCTCCGGCTCTCGCAAGGGTATACGAGCTCGTGTCCATGAAACGTTTGTCGTTCTTATTTTACTTCTTGTTCTTACATCAACATTGGTTTGGGTTGGCTCTGCTTTCATTTCCGACAAAGACAGTTCGTGGTTTGCGAAATTTTCAGGTTCATGGCATCCACCTATCCCTCTCATGTATTCATTCATCTCGCTCTTCGGTGCTCTGCTTTTGTTAATATGCACTCCTCTGGGCTTCACGAAACTCTTCACCATCTTAGGAACCTACATCATTGTTCCTAAGttttttgttgatctggATGATCAGATCCATGCTCTGCAATTGGAAGAGGAGCAATTAAGAAGGGTGAAAGACTCGTCACGTGGAATCAGCTACTACCAACTCAAACGAACAACAGATCAAGTTCCTACACTTTGTTATGTTATcaaacaacgtaaaaaacTTGagCATGAGCGCGACTCATCTGTGTTTGGAAAGAACTTATTGTACCCTCTTTCGCTGATAATTCTCTTGTTACTGACAGCGGTGTGCTTACTCATGGTTGCGTTGAATTGCTTCAAGTTGTTGATTGGATCACAAGTCCTACCTATGGTGAACaagTATCCACTCGGGAAGATTTCCATCTCAAAGTTGGGATGGTTCGGAATTCTACTGCAAATATTTCTCATTTTTTACATAATGGCTGCTTCTGTCGTTGGATTTTACAGTTCACCTCTTTTCTCACACCTTGCACCAAAGAAACACGCTACTAGCATGACAAAGCTTATTGCAAACAGCGTCATTCTTCTTGTGCTGAGCTCAGCATTGCCGGTTTTATCCCGGACCCTAGGCATTACTACCTTCAATTTGATGGGAGAGTTTGGACGGTTGGATTGGCTGGGGAATTTTGAACTGGTGTTATTTTACAACGTGCTATTTGAAGCTTCCACCTTGTTCGTTTTCATAAGCAAGTTCACGAAGTCAGTTCGTAATGCTCTCTACGTCCATTTCAAGCACACCTCCGTGTTTCATACCCCATGGAAACCAAAAAAACTCTGATATACATATACCCCCTGCAAGTACCCTGATATACCTACCTCCTGGAAACGCAACAACTCTGATATACATCTCCCCTGGAAACGCAACAACTCTGATATACATACCCCATGGAGACGCAACAACTCTGACATACCTACCCCCTGGAAACCCCAGAACTCTGATATACATACCCCCTGGAAACGCAAGAACTCTGATTACTTACCCCCTGGAAACGCAAGAACTCTGTACAATACCCCCTGAAGCGGAAGAACTCTGTACAATACCCCCTGAAGCGCAAGAACTCTGTACAATACCCCCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZX75	Protein LMBR1L OS=Xenopus laevis OX=8355 GN=lmbr1l PE=2 SV=1
Q8WVP7	Limb region 1 protein homolog OS=Homo sapiens OX=9606 GN=LMBR1 PE=1 SV=1
Q9JIT0	Limb region 1 protein OS=Mus musculus OX=10090 GN=Lmbr1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006399 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04791 all species →	LMBR1	LMBR1-like membrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008075 all species →	Family	Lipocalin-interacting membrane receptor	Interproscan
IPR006876 all species →	Family	LMBR1-like membrane protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12625 all species →	LIPOCALIN-1 INTERACTING MEMBRANE RECEPTOR LIMR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25215	LMBR1L; protein LMBR1L	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.