Gene detail

Detailed information of ENSQNNP00000024403.1 in Candelabrum cocksii

Genomic Location: chr8:14823478...14824909
NR annotation: AAB48010.1, Cnox5 homeodomain protein [Eleutheria dichotoma]
Species Candelabrum cocksii · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90423	Homeobox protein Hox-B1b OS=Danio rerio OX=7955 GN=hoxb1b PE=2 SV=3
Q28601	Homeobox protein Hox-C9 (Fragment) OS=Ovis aries OX=9940 GN=HOXC9 PE=2 SV=1
Q9PWM6	Homeobox protein Hox-D9a OS=Danio rerio OX=7955 GN=hoxd9a PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000051 (this species only) · gene tree & orthology
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR020479 all species →	Domain	Homeobox domain, metazoa	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR046327 all species →	Family	Homeobox protein Hox-A1/B1/D1	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45946 all species →	HOMEOBOX PROTEIN ROUGH-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQNNP00000024403.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.