Gene detail

Detailed information of ENSQNNP00000024704.1 in Candelabrum cocksii

Genomic Location: chr8:496264...501811
NR annotation: XP_047136294.1, zinc transporter ZIP6 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSQNNT00000025645

TTTGGatcttttcaatatttatgACCTTCTCGTGGCATCTACTTGTTCGCGAATTCTTGCAACTATTTTGCAACATTATGACGCataataaagtttaaaattatttttcagttTGAATGTGTGGTATATAAATTATTCAGTTGCTctgaataaattaaatttctcgTGAAGCTTTGCAAAGATCGTCTTTTCTTTTGCACACGACACGCAATGTTTtggtgaaaatgtttttggtgcaaaatttcTGAAAACTTTCGTTTTCAAATCTTCGTCGATAAAAATAACGATACTTACATGTGTAAAACCAAATCGCATCCAATGATGTGTAAATTGCATGTTTCCTTGGTTTTCTATCTTTGTGCTTTCggttttgatgttgttttaactTCGACAACTTCGCCTACAACAAAGTGCCACGACTTGGTAAAGACCACaggaacaaaaaattttttgaatgaaatttttgaCAAGTATGCCAAGAACGGTTCGGAAACACTTTCGATCACAGAACTTACATTGTTAATGAAGAGCATGTCACTTGGAAATGTGGTTGTGGAATGTGAGCCTGGAGATGAGGTGTGTCGAAAGAGTGGCCTGGTAAACCATCACAAAATAGAAGAAGAAGGGAAGCATCATTCACGTAAGCGCAGAAAAGTCTTAGATGATGaggacgatgatgaaaacgagCATCACTCACATTGGGAAAAACATGTGGCTAATTGTCTTAAACCGGCTGACATCTTGGAATTACATGGCATcagtaaaaatgaaaatattacaaaagaagattttttgcGGCTTGGTCCTTCATTGATTCAGCAGGTGGGAAATAAAGTGTGTGTTCACGAGCACGTCAAGATTCTTGGTCACTTCCACGGAGGTGATAGTTTTCCCACGCAACATCAaaGTTGGGGTTATGGTATTCTCTCTATCACCATAATTAGCCTGTTATCGTTATCAGTCATCAGTCTAATTTCGTGTTTGAAGAAGTCTTTTTATCATGCAGTAATGTCCTACTTGGTCGCACTTGCTGTAGGAACCTTAGCAGGAGATGCTATGCTACATCTAATTCCACATGCGTTCGCAGAAGGTGCTAACAGTGCAACGAGTTTGCGTTTGAGTGAAGAAGATGAATTGAAGCAGCATTATTCACAAGTGTGGCGCGCTCTTTTTGTGCTCCTCGGTATATACTTGTTCTTTGTCGTGGAACAGTTGATGAAAGCCAAGGTTCTTTGTTGTAAAGGGGGACATGGACACAGTCATGGAAATAATCGTGGCCACTCTGCCGTGTCGCAGAAGCAATCCCCTGATCTGCGAGAGAAGAGTCCCAGTTTAACATTGAGCCCCTGCAGTGACAACAGCACGGTTTGTTTTGTGAAGGACTCAGTGGAAACAGATGATGAAAAGGCGGAGTTTGTTATGGAGGTTTCTGATGACAATGCTCGCGTGGAATTGCACACAGTGCTCAGTTGTGAGTCAGATATCCATTCATACAGCAAGAGCAAAGAAGATGGACACTACCATGTGGAcgatcgtcatcatcatcatcaccatggTGAGAAGGAGATCACCAAGGATACTAACATCGCGTCGGTTGCTTGGATGGTTATCGTTGGAGACGGTTTTCATAATTTCAGCGATGGGTTGGCGATAGGAGCAGCTTTCAGCGCTTCACTCTCCAGCGGCTTGAGCACAGCTATTGCTGTCTTCTGTCATGAACTCCCACACGAGCTGGGTGATTTTGCGATTCTCATTAATTCTGGCATGACAATCAAACAAGCCATTGTGTACAACATAATGTCCGCCATACTCGCTTATTTCGGCCTGGCAATAGGCATATTAATAGGCGAATACGAGATGGGCCGACATTTCATTCTCTCCATTACTGCAGGTCTTTTCCTATATGTATCTCTAGCCGACATGTTGCCTGAGCTGTCCCATCAAGAGGTACCTAACCAATCGCTTGCAGTCACATACTTGTGTCAACATCTCGGCATCATTAGCGGCATCGGCATGATGCTTTTTATATCCTTATACGAGCACTCAATGTAGACCTTTTCTTTACTGTTTAACATTTGCGTAGAGGATTTGTACGAAAGTAGAGTTAGTTGGAAAGTGATCGTAATATTAACCGAACCTCAGTGTTTTTATGGAAGTTTGCTTTTATAGGGAATCgattttatatgttttaacGGCGTAAATATAATtgtaaaaattgtatatatttaagatTGTTTTATACGACAAGATAAACATGAAAAGTAAGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PEH9	Zinc transporter ZIP10 OS=Danio rerio OX=7955 GN=slc39a10 PE=2 SV=2
Q9ULF5	Zinc transporter ZIP10 OS=Homo sapiens OX=9606 GN=SLC39A10 PE=1 SV=2
Q6L8F3	Zinc transporter ZIP6 OS=Danio rerio OX=7955 GN=slc39a6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000456 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02535 all species →	Zip	ZIP Zinc transporter	Family	Interproscan
PF21116 all species →	EF-hand_Zip	Zip protein EF-hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003689 all species →	Family	Zinc/iron permease	Interproscan
IPR050799 all species →	Family	Zinc Iron Protein (ZIP) Transporter	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR049406 all species →	Domain	Zinc transporter ZIP4/12, EF-hand	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12191 all species →	SOLUTE CARRIER FAMILY 39	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0046873 all species →	Molecular Function	metal ion transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006875 all species →	Biological Process	obsolete intracellular metal ion homeostasis	Interproscan
GO:0071578 all species →	Biological Process	zinc ion import across plasma membrane	Interproscan
GO:0140410 all species →	Molecular Function	monoatomic cation:bicarbonate symporter activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQNNP00000024704.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Candelabrum cocksii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Candelabrum cocksii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →