Gene detail

Detailed information of ENSQNNP00000024935.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: AAC63362.1, head-activator binding protein precursor [Hydra viridissima]
Species Candelabrum cocksii · all data for this species · gene families

Sequence

CDS

Transcript

ENSQNNT00000025887

AGACTTAACAACATATACATATCTAGAGATTATGGTTTAACCTTCAAAAAGTACACAGAAAAATTTGTTCTTCCTAATGGAAGTTTGACTTCAATTACAGACATATATTCCAGCATAGCTGATGagtcaaaatatatattgactGGGAAATTTCACAAGTATCTATTTCTCTCCATTGATAACTGTGTGTCATTTGTCAGAATACATACTTTCTTTTATCCAATTGACATTCAGTTTCATCCAAAGTTTTCTGAATATATCCTTGGTTACGGCTATGAACACAATGATACGCAATTAACTttgtatatttcaaaaaaccaTGGTTTGTCTTGGCATTACATCTCTTcaaatattgtaaaacaaaactacTTTTGGAGTTATGGTGTTCCCTATGATAATTCTACGTCTATTTATTATCAAAGCCACAAGCTTTAcaCATCTGGTAAAATGAAAAGTGTCATTCAAAAGCATTCTGCCTTTGGTTCTTTGGACAGTTTAAATGAGTCTTCTGTAATTGCGCGTAATATCAATGACTTCAAAGTGAAaggaaaatatatgttttacaCTGACAATAATGGCAACAACTCTTCGCTGTTATCTTTGTATGTGTCTGAGAATCGTGGTTATTTCAAAAAGACTTTCTTCCCATCAAACCAGGTATATATTGTTGTTGATGttcatgaagaaaaaataatgataGCTGCAGGAAATGATTCTTTGGTGGATTTGTTTGTGTCACAAAAACATCCAACCCAATTTAAGCGTTCTTTTGATGGGATGTTTATTTTTACCAAAAtcagtaaaaaatataacgtGAAGACTAGGGACATTGATTTTCATCAAGTAAAAAGTAAAGAGGGTGTTTATATTGCAACAAAAGTTATCAATAAAAAGATGCATtcatatatttctttcaacaatGGGAAAAGATGGACATTAATCAATCCACCAAATGACACTAAATGTCTTCAAAAGAAAAATTGTTCTCTACATCTCTTTCTAAAGTATTCTCCAAGGAACAATTTATTCCGTTTCACCCCAGTGTACTCAAAAGCTAGTGCTCCAGGTCTTGTCATTGCTTCCgGCAATATCGGTGAACATTTACAAAGACATGTCTCATTGTTCCTTTCAACTGATGGAGGAATAACCTGGAAAAAGATATTTAAAGGACACTATCACTATTGTGCTGTGAAACAAGGAAAGGTTATAATAGTTgctaaaaaatacaaattaacAAAGAAAATCAGCTTTAGCACTGACAAAGGCCAAACTTGGAAGGAATATCAGTTTTCACCTCAAGCCATGAAAATCTATTCCATGCAAACTGAACCCGGTGAAAAATCAGCTGTACTTTCTCTGTTTTGTTCCTTACCTAAAAGTCATTCCTGGATAATGACACAAGTGAACATGTCATTTGCAATCGTTAATTGTGTCAACAATGAGTTCAAATGCTATGATGGAAGTAAATACATTCAAAGTAGTTGGAAATGTGATGGTGATAATGACTGTGATGATGGAAGTGATGAACAAAGTTGTTCAGTTAACTGTGACAGCAGTGAGTTCAAATGCCAGGATGGAAGTAAATGCATCCAAAGTAGATGGAAATGTGATGGTGAAAATGACTGTGATGATGGAAGTGATGAACAAAGCTGttCAATCAACTGTGACAGCAGTGAGTTCAAATGCCTGGATGGAAGAAAATGCATTCAAAGTAGTTGGAAATGTGATGGTGATAACGACTGTGATGATGGAAGTGATGAACAAAGTTGTGTTAACTGTGACAGCATTGAGTTCAAATGCCAGGATGGAAGTAAATGCATTCTAAGTAGATGGAAATGTGATGGTGATAACGACTGTGATGATGGAAGCGATGAACAAAATTGtgTGAATTGTGACAGCATTCAGTTCAAATGCCAGGATGGTAGTAAATGCATTCAAGGTAGTTGGAAATGTGATGGTGATAATGACTGTGAAGATGGAAGTGATGAACAAAGTTGtgCGCCAAAAGTTACCTGTGACAGCAGTGAGTTCAAATGTGGCAATGGACGTAAATGCCTACAAAGTAGTTTGAAATGTGATGGTTATAACGACTGTGTTGATGGAAGTGATGAACAAAATTGtgTGAATTGTGACAGCATTCAGTTCAAATGCCAGGATGGTAGTAAATGCATTCGAAGTAGTTGGAAATGTGATGGTGATAACGACTGTGATGATGGAAGTGATGAACAAGGTTGTGTGAATTGTGACAACAGTGAGTTCAAATGCCAGGATGGAAGTAAATGCATTCGAAATAGTTGGAAATGTGATGGCGATAACGACTGTAATGATGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5E1P1	Vacuolar protein sorting/targeting protein 10 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=VPS10 PE=3 SV=1
Q8WY21	VPS10 domain-containing receptor SorCS1 OS=Homo sapiens OX=9606 GN=SORCS1 PE=1 SV=3
Q9JLC4	VPS10 domain-containing receptor SorCS1 OS=Mus musculus OX=10090 GN=Sorcs1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR006581 all species →	Domain	VPS10	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050685 all species →	Family	Low-density lipoprotein receptor	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270 all species →	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24498	SORL1; sortilin-related receptor	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.