Gene detail

Detailed information of ENSQNNP00000025507.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: XP_002156786.1, eukaryotic translation initiation factor 3 subunit L [Hydra vulgaris]
Species abbreviation CCOCK · all data for this species · gene families

Sequence

CDS

Transcript

ENSQNNT00000026492

aagGTTGTTTAGATTACAAATTCAAATGACTTATATATCTGATTgagaaaatcaaaacaacgTCGGTTTTCTAATCGAGGCATTTAAAAAAGAGCGTACATTGTTCTACACGTGAAGTTTGATCAGAATAATGGATGGCGAAGGCGCTTATTTGGAAGGGGAACAGGGCGTGGTTCCTGGATACGTTGTGTCTGAAGTTGTCCAAAAGTTCATTGTGTATTTCTACAAACAAATTTGCGAGAGGaatgtTTACGAAATCCAACAAATTTATGATGAAGGttttaacaagttgacCGAACAGTATTTCATGAAATGCGCTTGGCCAGAAGCTGAAGATATCGCCCCCCTAGTTGATGAAGacAAGCTCTTTCTAACATTGTACAAGGAGCTTTACTACCGGCACATTTATTCAAAGTTAAAGCCAACCATGGAGCATCGTTACCAGTCTTATTACAATTATTGTGAACTGTTCAATTATATTCTTGATGAATCGGCACCATCCACACTCGTTCTTCCCAATCAATGGATGTGGGATATCATCGACGAATTCATCTACCAGTTCCAAGCGTTCTGTCAGTTCCGTGCAAAGATCATGAACAAAACCGATGACGAGATCTCTTCGCTCAAAGAGAACGTACACAAAGTGTGGAACGTCCACAGCGTGTTGAACGTGCTCTACTGTCTCGTCGATACGTCGCACATCAACGAACAACTCGAAGTGTTTGCCAACGATGACGATCCAGACAGCGTTGCTGGTGAATACGGGAAACTCCCTCTCTATAAAATGCTTGGTTATTTCAGTTTGATTGGCCTGCTACGTCTGCACTCGTTGCTAGGCGACTATTACCAAGCTATAAAAGTGCTTGGAAGTGTTGACCTCACATTGAAAAGCTTGTATTCCCGTGTTCCTGCCTGCCAAGTGACCACCTACTACTATgttggttttgcgtacatgatGATGCGAAGGTACGAAGATGCCATCAGAAGTTTTGTCAACGTCCTCTCGTACGTGCAACGTGCCAAGCAAGTCATTCAAACCAAGTCCTATCAGTTTGAGCAGATCAAAAAGAAGACGGAGCAAATGTACACGCTCCTCTGCATATGCTTGGTGTTGTGTCCACAACGGATTGACGAGAGCGTGAGCCAGATGCTCCGAGAGAAGACCCTTGATAAGATGCTCAAGATGCAGAAGGGAGACACGAGCGTTTTTGAAGAGTGCTTCTCCTACTCTTGCCCTAAGTTCATATCCCCAATACCTCCAAACTACGACACACCCCCTGCTAATTCAAACCTGGATCCTTTTAACTTACAATTGAGAATGTTTATGGTGGAAGTACAGCAACAAAGTATCATTCCTGTTATAAGAAGCTATCTGAAGCTATACACCACCATGTCCATACCAAAGCTTGCATCATTATCAGAACTTGATGAAGGGACCCTGCAAACGGCGCTGCTGTGTTTCAAGcACAAGCAACGCAACCTGGTGTGGACGAAAGGCGCCGATGCTTTGGACGGTGACTTTCAATCTTCGCCGGAGACTGACTTCTACATCAGTAACGACATGATCCACATAGCTGACACGAAAGTGGCGCGAAGGTACGGAGATTTCTTCATTCGACAGATCAACAAAATCGACGAGTTCACAAGAAGCAAGTGGAAGCAGGAAGCTCACTGAACGAGAGAGACGATCGATATAGCGTAGTGTTACTATCTCTGTTATATAATCCCCAGTAATACACGCACTCGCTAATGCTTTATATTCACTTCTTAATATAACATTAAACTTGAGAAAGATGACTGTTAAGGCCTTTTGAATATATTGGGAGTCCAGCGAACAGCTTTAGGAATAGCGTAATTGGCACAAATGTAAGGGGGATGTTTGGAAACGGTTTCCAGATCAGAAAATAGACGGTGATTCAAATCCCCTGTTCGGTAACAAATGCGACAACAACACACAAATCaaagctgaaataaataaacaaattcctaTTTTATACTACGcaaataaaccataaaaaacgaaaacttaCTATTGTTCCGCCAATATAGCAAGCTTAACAAAATGCGAAGTCGCGATGCGAAACCCAAAGCGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SDW5	Eukaryotic translation initiation factor 3 subunit L OS=Nematostella vectensis OX=45351 GN=v1g169424 PE=3 SV=1
Q5F428	Eukaryotic translation initiation factor 3 subunit L OS=Gallus gallus OX=9031 GN=EIF3L PE=2 SV=1
Q3ZCK1	Eukaryotic translation initiation factor 3 subunit L OS=Bos taurus OX=9913 GN=EIF3L PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005683 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10255 all species →	Paf67	RNA polymerase I-associated factor PAF67	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019382 all species →	Family	Translation initiation factor 3 complex subunit L	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13242 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15029	EIF3L; translation initiation factor 3 subunit L	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.