Gene detail

Detailed information of ENSQNNP00000025762.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: XP_002159349.2, probable glycine betaine transporter [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Sequence

CDS

ENSQNNT00000026763

ATGAAGAAGCAGGGTGAAGTGGCAGAAGTCGATCCAGAAGTAGAGAGAAGGTTGGAGCAAATACGCAACAGAGATATCGAAGCCTTGCAAAAGGAACATAtgaaaaaATGTCTCCACGTGAGCGGGAAATTAGGTCCATTCAGCTTCTACTTTAATCCATTGACCAGCATCTTATCGGCTATTATAATCTGGGGATTTGTGGCTTATTGCATAAGCGATGCAAAAGGAGCAAAAGACAATTTGACGGTAGTCAAAAACTGGGTGACTGAAAAATGGACTTGGCTGTATATTGGTACACAGGACGTTTGGGCGGTGTTCATCGTAGCTTTATACTTTTCCAAATACTCAAACTTAAGACTGGGGCGAGAAGATGAAAAACCAGAGTTCAGTGATGGCTCTTATTTCATGATGCTGTTTTCAGCGGGTATCGCTATCGGCTTGTTTTACTACGGTGTCGCTGAACCTATCAGTCATTACAAACCTGGATTGTATGGAAATCGCTATAACGGAagATACAGCAACAATCAGGAGGCGCAAGATGCCATTAACTTGACGTTCTTTCACTGGGGTATACACGGTTGGATTGTTTACGTCATCATTGGATTGCTGTTAGGGTTTCTCTGCTATCGTCGCGGGTTGCCAATGACAATGCGCACCTGCTTCTATCCAATACTCGGCGAAAAGATCTTCGGTATAATCGGCGACTTGATCGACATCCTTTGCATCATCTGCACAATGTTTGGGGTTTGTACGAGTCTGGGTCTCGGCGTGATTCAGCTGAACAATGGTATTCATCGCATCAACCCCGACATTGCTGAAGACACGGATACGcagatcatcatcatctggtGTGTGACGTTGTGCGCAACTATTTCCGTCATCACTGGCTTGAAAGTTGGGATTAGAAGACTCTCGGAAATTTGCTTTGGGATCGGTTGTTCAATTATGTTCATTATATTTTACGCCGACAACACGTGGTACATTTTGAACTTGTTTGTCCAATCAGTGGGCTACTATTTACAATGGATCATACAGCTAGGATTCCATACTGATGCTTTTGCACAATTAGGCAATGCACCTGATGGAAAGGAAGCCAAAGATTGGCTTGGCGGTTGGACAATCTTTTATTGGGGATGGTGGATCAGCTGGTCGCCTTTTGTGGGAATGTTCATAGCGAAAATCAGTCGCGGCCGCACTATAAAAGACTTCATCATGTACACTCTCACTTTACCATCTCTCTATTCATTCTTTTGGATGAGCATATTTGGTGGAGTTGGCAttcaatttgaaaacaacGCTGTTAAATTGGGTATGAACTGCTCGCTATACAGAGTAAATGGCACTGGTGCTGATTTACCTCCAGAAAATCCGGAACTGTACAAATCGCGACAGGCGGAACTTTTTGCGATATACCACACAACCATGCTTTCTTGCAGAGGTGTAACACAAATGTGGTTTGATGTAATGGATTCCTACGGCGATTTAGGGATGTTTTTGTCCATTTTCTCTTTAATTGCCATTATTCTTTACTTTGTGACCAGTTCAGACAGTGGCTCGCTGGTCATCGACTGCTTATCAGCCAACGGAAACCCTGATCCACCTGTTCTCCAGAGGATCTTTTGGGCGTTGACTGAAGGTGCCACGGCCACTGCACTGTTGAAGGCCGGTGGAACAGATTCATTGGATGCGCTACAAACTGTATCTGTAGCATGTGGACTTCCTTTCACGTTTTGtttgaattggacatgcgtggCGATGTGGCGTGCTGTGAGGGAAGAGGCAGGTGAGATCGACCAAACGGCTGGCAGGTGGGGATGCAGCATGTGGGCGTGGAATTGTGAGAGACTCCTTAAGGTTCTCGCTTCTATTTTCTGCCCTTGGTTGTATCTTGGTGAATGTCATATGAtgcttgaaaataaaaagtccATACCAAAGCAAATTCTTTATAGCTTGTCATACGCAATTCCGTTTTATTTGTGGATATTATTAATGGTTGTGGAGGTGAAGGTCGCCGGCATTTCGTACGTTGGCTGGGCTGTTTTGATGTTCTTCTTTGCGTTCGGAAGCACTCTGAGGGGTGAAATTCGAATGAAATACGAAATCGAAGGTGACATGATAGAGGATTTGTTTGCATTTGTTCTTGTGTATCCGTTAGCAGTCATGCAATGTCACGAGCAATTAATGCTCGGGGAGGCTCCTGTTGATACTATGACCTATCCTCAAATCGAAATGGGAAAGAGAAACGAAGGAGTGGCGCCTGAACCAGTTGTTCTTCAAGGTCATAAAGGACATTACTGA

Transcript

ENSQNNT00000026763

AACCAAGTTATATTAGGAGAGGCAAAACACTGGAACACATACTTGAAAACGTATTACTGTAAAGATAGTTGAAAAAGGCAAAACTAAGATATCACAGACAATGCAGACCCATCGAACAATGATTGATAGCTATTTATGCGAATGGATGTGGCGACAACGAAACAAAAACGCTAATCATGGAATATTTAACGAAATACTAActgatatttttaaacaatttcctccacaGCATTTCACGCACTGTTGATTCCTTCGCTACGAGTTAGTCATATCACTTTTCGCCTGTTACTGTTTACAACATGAAGAAGCAGGGTGAAGTGGCAGAAGTCGATCCAGAAGTAGAGAGAAGGTTGGAGCAAATACGCAACAGAGATATCGAAGCCTTGCAAAAGGAACATAtgaaaaaATGTCTCCACGTGAGCGGGAAATTAGGTCCATTCAGCTTCTACTTTAATCCATTGACCAGCATCTTATCGGCTATTATAATCTGGGGATTTGTGGCTTATTGCATAAGCGATGCAAAAGGAGCAAAAGACAATTTGACGGTAGTCAAAAACTGGGTGACTGAAAAATGGACTTGGCTGTATATTGGTACACAGGACGTTTGGGCGGTGTTCATCGTAGCTTTATACTTTTCCAAATACTCAAACTTAAGACTGGGGCGAGAAGATGAAAAACCAGAGTTCAGTGATGGCTCTTATTTCATGATGCTGTTTTCAGCGGGTATCGCTATCGGCTTGTTTTACTACGGTGTCGCTGAACCTATCAGTCATTACAAACCTGGATTGTATGGAAATCGCTATAACGGAagATACAGCAACAATCAGGAGGCGCAAGATGCCATTAACTTGACGTTCTTTCACTGGGGTATACACGGTTGGATTGTTTACGTCATCATTGGATTGCTGTTAGGGTTTCTCTGCTATCGTCGCGGGTTGCCAATGACAATGCGCACCTGCTTCTATCCAATACTCGGCGAAAAGATCTTCGGTATAATCGGCGACTTGATCGACATCCTTTGCATCATCTGCACAATGTTTGGGGTTTGTACGAGTCTGGGTCTCGGCGTGATTCAGCTGAACAATGGTATTCATCGCATCAACCCCGACATTGCTGAAGACACGGATACGcagatcatcatcatctggtGTGTGACGTTGTGCGCAACTATTTCCGTCATCACTGGCTTGAAAGTTGGGATTAGAAGACTCTCGGAAATTTGCTTTGGGATCGGTTGTTCAATTATGTTCATTATATTTTACGCCGACAACACGTGGTACATTTTGAACTTGTTTGTCCAATCAGTGGGCTACTATTTACAATGGATCATACAGCTAGGATTCCATACTGATGCTTTTGCACAATTAGGCAATGCACCTGATGGAAAGGAAGCCAAAGATTGGCTTGGCGGTTGGACAATCTTTTATTGGGGATGGTGGATCAGCTGGTCGCCTTTTGTGGGAATGTTCATAGCGAAAATCAGTCGCGGCCGCACTATAAAAGACTTCATCATGTACACTCTCACTTTACCATCTCTCTATTCATTCTTTTGGATGAGCATATTTGGTGGAGTTGGCAttcaatttgaaaacaacGCTGTTAAATTGGGTATGAACTGCTCGCTATACAGAGTAAATGGCACTGGTGCTGATTTACCTCCAGAAAATCCGGAACTGTACAAATCGCGACAGGCGGAACTTTTTGCGATATACCACACAACCATGCTTTCTTGCAGAGGTGTAACACAAATGTGGTTTGATGTAATGGATTCCTACGGCGATTTAGGGATGTTTTTGTCCATTTTCTCTTTAATTGCCATTATTCTTTACTTTGTGACCAGTTCAGACAGTGGCTCGCTGGTCATCGACTGCTTATCAGCCAACGGAAACCCTGATCCACCTGTTCTCCAGAGGATCTTTTGGGCGTTGACTGAAGGTGCCACGGCCACTGCACTGTTGAAGGCCGGTGGAACAGATTCATTGGATGCGCTACAAACTGTATCTGTAGCATGTGGACTTCCTTTCACGTTTTGtttgaattggacatgcgtggCGATGTGGCGTGCTGTGAGGGAAGAGGCAGGTGAGATCGACCAAACGGCTGGCAGGTGGGGATGCAGCATGTGGGCGTGGAATTGTGAGAGACTCCTTAAGGTTCTCGCTTCTATTTTCTGCCCTTGGTTGTATCTTGGTGAATGTCATATGAtgcttgaaaataaaaagtccATACCAAAGCAAATTCTTTATAGCTTGTCATACGCAATTCCGTTTTATTTGTGGATATTATTAATGGTTGTGGAGGTGAAGGTCGCCGGCATTTCGTACGTTGGCTGGGCTGTTTTGATGTTCTTCTTTGCGTTCGGAAGCACTCTGAGGGGTGAAATTCGAATGAAATACGAAATCGAAGGTGACATGATAGAGGATTTGTTTGCATTTGTTCTTGTGTATCCGTTAGCAGTCATGCAATGTCACGAGCAATTAATGCTCGGGGAGGCTCCTGTTGATACTATGACCTATCCTCAAATCGAAATGGGAAAGAGAAACGAAGGAGTGGCGCCTGAACCAGTTGTTCTTCAAGGTCATAAAGGACATTACTGAAATACcatcatttaacatttttcactttttattttgtatactAATTTCACTTAATTTGAggtctttattttaaatatgcaTCACCATACAAATATGTTCAATTTGTATTTATAAccataattaatttttgtattttctgcatccaataaaataaatcaatttcGGTCTATTGCAACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q87PP5	Glycine betaine/proline/choline/ectoine transporter VP1456 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VP1456 PE=1 SV=1
Q87NG3	Glycine betaine transporter 1 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VP1905 PE=1 SV=1
P9WPR6	Uncharacterized transporter MT0942 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT0942 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000591 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04749 all species →	PLAC8	PLAC8 family	Family	Interproscan
PF02028 all species →	BCCT	BCCT, betaine/carnitine/choline family transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006461 all species →	Family	PLAC8 motif-containing protein	Interproscan
IPR000060 all species →	Family	BCCT transporter family	Interproscan
IPR018093 all species →	Conserved_site	BCCT transporter, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30047 all species →	HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0071705 all species →	Biological Process	nitrogen compound transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02168	betT, betS; choline/glycine/proline betaine transport protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.