Genomic Location: chr13:9310840...9315671
NR annotation: XP_020778328.1, ATP-sensitive inward rectifier potassium channel 12 [Boleophthalmus pectinirostris]
Species Candelabrum cocksii · all data for this species · gene families
| CDS |
| ENSQNNT00000027342 |
| Transcript |
| ENSQNNT00000027342 |
| Protein |
| ENSQNNP00000026318.1 |
| UniProt accession | Description |
|---|---|
| O19182 | Inward rectifier potassium channel 2 OS=Bos taurus OX=9913 GN=KCNJ2 PE=2 SV=1 |
| Q9MYY9 | Inward rectifier potassium channel 2 OS=Canis lupus familiaris OX=9615 GN=KCNJ2 PE=2 SV=1 |
| P49656 | Inward rectifier potassium channel 2 OS=Oryctolagus cuniculus OX=9986 GN=KCNJ2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001027 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01007 all species → | IRK | Inward rectifier potassium channel transmembrane domain | Domain | Interproscan |
| PF17655 all species → | IRK_C | Inward rectifier potassium channel C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR040445 all species → | Domain | Potassium channel, inwardly rectifying, transmembrane domain | Interproscan |
| IPR016449 all species → | Family | Potassium channel, inwardly rectifying, Kir | Interproscan |
| IPR013518 all species → | Homologous_superfamily | Potassium channel, inwardly rectifying, Kir, cytoplasmic | Interproscan |
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR041647 all species → | Domain | Inward rectifier potassium channel, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11767 all species → | INWARD RECTIFIER POTASSIUM CHANNEL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005242 all species → | Molecular Function | inward rectifier potassium channel activity | Interproscan |
| GO:0006813 all species → | Biological Process | potassium ion transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0034765 all species → | Biological Process | regulation of monoatomic ion transmembrane transport | Interproscan |
| GO:1990573 all species → | Biological Process | potassium ion import across plasma membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05005 | KCNJ12_18, KIR2.2, KIR2.6; potassium inwardly-rectifying channel subfamily J member 12/18 | - | Ion channels | ko04040 | deepkoala |
Genes whose expression across the transcriptome samples of Candelabrum cocksii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Candelabrum cocksii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
