Gene detail

Detailed information of ENSQNNP00000027202.1 in Candelabrum cocksii

Genomic Location: chr8:4959754...4980713
NR annotation: XP_012563523.2, ankyrin repeat and LEM domain-containing protein 2 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSQNNT00000028264

atgtttaataataaaGACTTATCAGAATTATCGAACTGTGAACTTGCAAATGCATTGAAATCTTTAAGCCTCAATGTTGGTCCTATCACATCTTCCACAAGAAGAATTTATGAAAAGCGACTACATGACCATCTTGCCAACTCATCTTCGGCAAAAGAAATCGTTAAACCCATTGAAGAACACTATTCTAACAATCATCAGGATTCTGAAAAATTGCATGTTCGTAATGGTATAACCGAGATCGAAGAAGTTTTGAATTCTCTTgtaaaaatagttgatgaAAACCTTGTTCCCGATAAACCTCAAAAGTTTTATGCTGTGTGGATTCCGTTTTCTCCTAAAGATTCTGTTTATAGAAAGCAACCAACTGTATTTAATACACAGAACAATGCTTTGGCTTTCATGAAAAAATGTCATGGTTCAAGATTTAAATCCTTTAAGTCTCACTCACAAGCCGAGGAGTTCTCATTATCAGAACAAAGTCCAGTTGTAGAAAAACGTGTTTCTGCAACtgcttttaaaactgtttttaagtCACCTTCATTCCTTGAATTGACAAAATACCGATGTTTTCTTCAAGAAGGTAATGTTGATGAGGTAACTAAGTGCTACAAAAATCCGCGATATCTAATAACGTCAAGTGATATGCCAGTTATACTTCATGAAGGGTCTCGTTTCAATGCAATGCACATTGCCTTGCGTGCCAATAATTTACAACTGTGTGAGTTAATTATGGAAACTTTACATTCACTCCGATTTCTTCATCTAATGTATCCAAATGCAACAAAAGAAAACTTGAGCTTTCGTGAGAAACACTTGGTTGACTTGTATTTAAACACTCCGGAAAAAATAtGCTGTGATACTTTACTCCATACGGCGTGTAAGTTTTGTTACAAAGATATCATAAGGTTTCTACTCAGATGCAAGGAAACCAACCCCCATCAAAGTAACAGGGATGGATGTACTCCGCGACAGGTTATTGGCACCAGAATGAAGAAATGTGCAAACAAAAGTCAAATTGTAAAGGAGATAGACTCTATCTTTGAAGagACCTATGTGCTGTTATACAAATCAAATATGTTAGCTGAAGTTGGAAAACCGATTCAATTGCATTTTTTAGAGAGGAATTGTttggaaaaagagaaaatccGAGCATATGTCGGTCCGTTGACACCAGAACGAGCAGATAAATTGTACAAGCAATGGTCATCAGAACGGAAGAGTCCTGTCGCAATGATAGATTATGATAAAGGTCTGGAGAGAATTGGAAGAGACATTGCGTTGAAAGAAGATGCCACATTCAACGAATTCTGGTCATTTCTTGAtagtttttgtaatttgtcaACTAAACAAGGCTTGgagaaattagaaaattacttaaaattgaaaaatgaaaaatttaattcAAACGACAATGAAGTGGAGACGACTTCACGTAAACAGCGTCCAATGTTGGTTGATCTATCCACGCTTGATGAGGAATCGCCTTTTGGTGATAGCACTGATGAACTCAAACGGAAACTCTCCTTCGAATTTGACCAACTGGCACATGAAGAGACAAGTGAGAGGGTTCACTTAAAGGACATGGAGTTAACAACGAAATCTACGTACACAGTGGATATAAATGTTAAACAACAATGCGCTGTTTTTAAGAGCTGTTCATCAAAAGATAGCATGCCTCATTCAccaaacagcaaaaatattagCCTGGACTCTACTGACTTTACTTTAAATGACAGTTTGGTTGACAGTTGTTCTACTGCAAACATATCTTCTGAGAATTGTGAAATGAAAGAAATCACTCCAATCTTTATAGCTGGTGATGCTCCTTCGAAACAAGACTTAGATGTGTTACGAGCCATTGAGTGTTGTGTTATTGAGCCACTGATGTTTCCCAATATTCTGCGATGGAAAACTAAAGTTGAATCTTTTCCTGATCACTTGAAAGACAGTTGGCCGACTCCTGGATCACCTCGTTATCGGAAGACTAAAAAACGCTCTCTACTCTGGACTGCTTAG

Transcript

ENSQNNT00000028264

AGTtttatataatacataataatattataagaataagaaatgtttaataataaaGACTTATCAGAATTATCGAACTGTGAACTTGCAAATGCATTGAAATCTTTAAGCCTCAATGTTGGTCCTATCACATCTTCCACAAGAAGAATTTATGAAAAGCGACTACATGACCATCTTGCCAACTCATCTTCGGCAAAAGAAATCGTTAAACCCATTGAAGAACACTATTCTAACAATCATCAGGATTCTGAAAAATTGCATGTTCGTAATGGTATAACCGAGATCGAAGAAGTTTTGAATTCTCTTgtaaaaatagttgatgaAAACCTTGTTCCCGATAAACCTCAAAAGTTTTATGCTGTGTGGATTCCGTTTTCTCCTAAAGATTCTGTTTATAGAAAGCAACCAACTGTATTTAATACACAGAACAATGCTTTGGCTTTCATGAAAAAATGTCATGGTTCAAGATTTAAATCCTTTAAGTCTCACTCACAAGCCGAGGAGTTCTCATTATCAGAACAAAGTCCAGTTGTAGAAAAACGTGTTTCTGCAACtgcttttaaaactgtttttaagtCACCTTCATTCCTTGAATTGACAAAATACCGATGTTTTCTTCAAGAAGGTAATGTTGATGAGGTAACTAAGTGCTACAAAAATCCGCGATATCTAATAACGTCAAGTGATATGCCAGTTATACTTCATGAAGGGTCTCGTTTCAATGCAATGCACATTGCCTTGCGTGCCAATAATTTACAACTGTGTGAGTTAATTATGGAAACTTTACATTCACTCCGATTTCTTCATCTAATGTATCCAAATGCAACAAAAGAAAACTTGAGCTTTCGTGAGAAACACTTGGTTGACTTGTATTTAAACACTCCGGAAAAAATAtGCTGTGATACTTTACTCCATACGGCGTGTAAGTTTTGTTACAAAGATATCATAAGGTTTCTACTCAGATGCAAGGAAACCAACCCCCATCAAAGTAACAGGGATGGATGTACTCCGCGACAGGTTATTGGCACCAGAATGAAGAAATGTGCAAACAAAAGTCAAATTGTAAAGGAGATAGACTCTATCTTTGAAGagACCTATGTGCTGTTATACAAATCAAATATGTTAGCTGAAGTTGGAAAACCGATTCAATTGCATTTTTTAGAGAGGAATTGTttggaaaaagagaaaatccGAGCATATGTCGGTCCGTTGACACCAGAACGAGCAGATAAATTGTACAAGCAATGGTCATCAGAACGGAAGAGTCCTGTCGCAATGATAGATTATGATAAAGGTCTGGAGAGAATTGGAAGAGACATTGCGTTGAAAGAAGATGCCACATTCAACGAATTCTGGTCATTTCTTGAtagtttttgtaatttgtcaACTAAACAAGGCTTGgagaaattagaaaattacttaaaattgaaaaatgaaaaatttaattcAAACGACAATGAAGTGGAGACGACTTCACGTAAACAGCGTCCAATGTTGGTTGATCTATCCACGCTTGATGAGGAATCGCCTTTTGGTGATAGCACTGATGAACTCAAACGGAAACTCTCCTTCGAATTTGACCAACTGGCACATGAAGAGACAAGTGAGAGGGTTCACTTAAAGGACATGGAGTTAACAACGAAATCTACGTACACAGTGGATATAAATGTTAAACAACAATGCGCTGTTTTTAAGAGCTGTTCATCAAAAGATAGCATGCCTCATTCAccaaacagcaaaaatattagCCTGGACTCTACTGACTTTACTTTAAATGACAGTTTGGTTGACAGTTGTTCTACTGCAAACATATCTTCTGAGAATTGTGAAATGAAAGAAATCACTCCAATCTTTATAGCTGGTGATGCTCCTTCGAAACAAGACTTAGATGTGTTACGAGCCATTGAGTGTTGTGTTATTGAGCCACTGATGTTTCCCAATATTCTGCGATGGAAAACTAAAGTTGAATCTTTTCCTGATCACTTGAAAGACAGTTGGCCGACTCCTGGATCACCTCGTTATCGGAAGACTAAAAAACGCTCTCTACTCTGGACTGCTTAGCATCTCGAAACGACTTTGTTCagaatatatttattgaaatgTGTTGTAGAATTGTTTTCTTAAACCATTATCACCATTGTAAATATAGCGCATGTTCACACAAgagagttttaaaaatttacctcGATCTTGGTCATTTTATACATACaaagtttttgattttgttacgATTGTTATTTTTCAATGCACATTTGCAGATAattgctgttgtttttttatatacaagaACAGATGTTATGTTCATATGGAAccaaaaaacttttagtttttaagaatattttatacaaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P1H6	Ankyrin repeat and LEM domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ankle2 PE=1 SV=2
Q86XL3	Ankyrin repeat and LEM domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ANKLE2 PE=1 SV=4
Q7TP65	Ankyrin repeat and LEM domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Ankle2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004842 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01693 all species →	Cauli_VI	Caulimovirus viroplasmin	Family	Interproscan
PF03020 all species →	LEM	LEM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR011015 all species →	Homologous_superfamily	LEM/LEM-like domain superfamily	Interproscan
IPR037056 all species →	Homologous_superfamily	Ribonuclease H1, N-terminal domain superfamily	Interproscan
IPR011320 all species →	Domain	Ribonuclease H1, N-terminal	Interproscan
IPR003887 all species →	Domain	LEM domain	Interproscan
IPR051108 all species →	Family	DHHC palmitoyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12349 all species →	ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for ENSQNNP00000027202.1 in Candelabrum cocksii.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21412	ANKLE2, LEM4; ankyrin repeat and LEM domain-containing protein 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.