Gene detail

Detailed information of ENSQNNP00000027446.1 in Candelabrum cocksii

Genomic Location: chr13:1255009...1290816
NR annotation: XP_047122589.1, RB1-inducible coiled-coil protein 1-like isoform X3 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSQNNT00000028517

ATGTTGCATGTATTCCTCGTGGACACTGGTTTTATGGTGAAGCTGGAAATGGAGCTGGCGGCAGAGAACGTTTCGGTACTGATGGACCAAATCTTTGAGAAGATATTCATATCTCCATGTAAGCAGGTTTTGATCTCGGCCAAAGGTGAACCTCTAAACCCGGATAAGCGAGTTGCTAGTTACGCAAGTGCAGGAacggAAAACCAGCCAATATTTCTGTTCAGCAAGTCAACAATCCAATCACCACTGCCTCCGTCACCCAGTGTCAACCTTGGATCGGAGCAATCATTAAAAGATGAGATTGATCGCTGTTTGAAGTTGCCTCCTGTGTACGAAACGCTTGTGGCAAGAGCCAAGTTAGCTTCTGATTTCCAGACATATGCTCTGGAATTGGGAGAAAGTTGCGAGAATTTGATAACTGATCAGAACTTTCAGAGCGAAGGATGGCAAGCGGCCATTGTGAACTTAGACCATATCACCACCGCATTTGAGAAGCATTTGGAGTCCTTTAAAGACAGCCACAGCGAGTTTGTCACCTCCCAAGTTCATTACAACACGATGCTGCAGAATTTCGGTTCTGTGCTTGACTTGCTGAAGCGCGTACCATTGCTTCCATCTCTACACAAGCAAGGCTCACAGATTTCGCTGTTGCAGTGGATAAGCGCGCACGATCATCAATCTTCACTGGAGAATCTTGTGTCACAATGCCAAGATGCTGTCCATCAGTTTAACTCTGAAGCCATCAGGATCATTGTGTCAGATGCTGAACTCGTCCTCGATTCTACGTACAGCACTAACATGAAAGAAATAAGAGGTCTCAAAGAACGATTGGTGAACCTGCAACATCGTCTCGAAATGGCTAAGCGACTTGTGCAAGACCAATGCGACATGGCTCagGGATTCCAGCAGAATCGGCAACGAGCGGCAAATCTTGGTGACTCATCCATCCTCCCAGATTTATGTTCGAGTCATCAGAAGCAACTGTACGTGCTCATGAAGAACCATCACAGGCTGAGGGAAATACGGAATGTTTGCGCGCGCGCCAAGGATGAGCTATCCGTCAACCTCCACACGAGATTAAAATGGGTGATGGCGATCGAGAAGCAACTTTGCGCGTGCAACAGCAAAATCCTCGTCTTCCACGATTGCTTGAAACGAATCAAGAAACGACTGGACATTTTTGAGCAGGTGTACGAAGCGCCCAGGCTGTATGTTTTGGCTGTTGTCGAGGCAACGAGAAGGAAGAGCTTTTCAAAGCAGTTTTATGAGTGGTCGAGATCGGTCTCTGAGAGTTCAAAGTCCACCCGTAAAGACGAGCTCAACAAACGACAAATTTTCCATCGTGTTTTCGGGCGGCATTTTATTCAGAATTTGTTCCCGGGGTTGGATGAAACACCGCAGCCATTTGCTGAGGAAGCGATTAAAATGTGCGACGACATCCTTCCAGACATCAGCGCGTGCGACATTCAAATACTGCAGGATCACGCTCCAGAGCTGATGAGCGAGTTTGCGGGCGCACAAATACGCTCGTGCGTGTCTCCCAACGCGCGCGACAAATTCAAGCAGCAGATGACGATGAGTGTGCTGAAGCGAGAGATTACCGACAACTTCCCCGTCCTCGACAACGTCGAATTTCAGGTGGGTTCGTCTCCCGACGAAGAAGATTATGAGCCGATCTCCTTGCGATCTCTCTCCGACAAGCTGAAGATTTCCGATGATAGTGATACCCTCTTCCAATCGGCTGAGCTTGAACTCCCCTCTTTAAACTCTTCCCCTGAGAAGTCTATTTCCTCGCCAATCGCAATACAGACGGCGCGGAAGTCTTTCTCCGACTCACATGACAATCACGTTCCCACCTTGGCTTCGTCATGCCGCAAGCACGTGAAAACGAACAGTTTGTCACTGGCTGACGCCATAAAATCCAGCGAAGTCAACGAGAACATATCGCATTCAGCGGAGCTCGTTAAAAACGCTAAACACGAGGTGACCACGCTAAAATCACGTTTGCGGCACGTGCAGGAGGACTTCCGCAACATTCATCAAGCTACTAATGACGAACTGAACAACGTGAGAGAGAAGCTGTTGGGTTTGTGCAAAGCTCAACTGACCTGCGAGAATTGCGTGAAGCTGCAAAACGAGAGACAAAACTACGAAACAAATCGCATCGCTTCTTTGGAAGAAGTGAACAAAGCCCTAAGGGACGAACTGAGGTCGGTGATGTTAACGCTCGATGATAAATGCGCGGATGTTAAGGAGAAGACGGACATTGTGAACGCTTTGAAGTTAGAGATAATCGATCTGAATGCCGCGATTGAAACGCGCAAATACGAAGCGAACGAGTGTAAAGAACGCGCGGACAATTTATTGCGAGTGTCGAATGCAAAAGATTCGTTGGTGGAGAATCTACAACGGGATGTCGAGCGATACGCGGAAGAGACGAAAAATCGAGAGCGCCAACTTCAGGCTTCCCAAGACCACATTTGCACCCTAAACCTTCAGATCAAAGAGCTGAACAAGAAGCAGAAGGAAGATATTGACTGCATCAGGCAAGTGAGCTTCAACCAGGTGCTTAATAAAGTGAAGAGAGAGAAGCAAACATCTATAGATGATCTGCAGGGGAGATTGGCTGCTTCCGAGAAGGATGTATCCGCTCTGAGGTTGAACGTGCAGCGTCTTCAACAGGAAATCTCCACGCACAAGGATGGCTACAATTTGTTGGAAGTAGAGGCGCAGAGAGACAAGCAGAAAATGAACGAGAAACTAGTGCAAATGAAATGCGACAACAACGAGTTGAAAGATGTATCGCGTACGCGCTGCGAGAAATTACAGCGCGAACTTTCTGACGCGCGCGAGAGCTTGGACGCGGAGAAGGTGAGAATCACGCGAGAGATGAAAGCGCGTTATGATGCTGATCTGGCTAGTGAGAGAGCTTCCATATTGCTGGCGTGCGAAGTGGAAAAGGAATCCGTGATCGAAAAGTACGGACGGCCGGAACATGTTTTGACACGAGAAAGTAGCTCGTTGGAGGAAGGAATCGACGAGTTGGAGATCGACCGTCTCTCAGAGAAAGTGACCTTTTTAGAGGACGagaatttaaaactgaaaaaagcCATTGAAAAGCAGCCTGACGTGGTCGATTATATGGAGAGGCTGCGGAATGTGAAAGTGTCTTGTAGGAAAATTATCGAAGGCGCGGTCGTTGTGTTAGTATTCGATGACGTCACCAAACAGTATGTCGCCCTTTCGTTGAGCGAGACAAAATGCTTTGCTCACCCAGAAACAATTCAACAACTTTTTGCTGggAAAACTACCGAACAGCCATGGCCTTGGATGCTGGCGGAAGTGCTCAAGATTGAATGGTGCATGACGAAGAAGGCGAGCAACAAATATCACTTGCCCACCGATGCCACTTTCATGAGGGTTTACGTGAAACCGTATTCCCCTAGCAACAGTCCTTCTGTTGCCTAG

Transcript

ENSQNNT00000028517

GATTTCTGAGGTCAAATCCTCCTGGCCTCGctgactcagcgaatgagtagcattttgatgcggtaaagtacgggtgttggtggtaggagtggcgcccgcctcaacagttacacccaaggTCTTGTGCTTAGGAAAAGGGGATTGATatcctcgtttacgcccgttactaaaattagggttaattcgacaacttTGCTTGCTTGCTTTGCTtgtgatatatatttataaattgattttcgATATTGAGTTGGCATGCATTTTCATTGAGATTCTGCAAAACATCTATCAATTGAATTAAAATGTTGCATGTATTCCTCGTGGACACTGGTTTTATGGTGAAGCTGGAAATGGAGCTGGCGGCAGAGAACGTTTCGGTACTGATGGACCAAATCTTTGAGAAGATATTCATATCTCCATGTAAGCAGGTTTTGATCTCGGCCAAAGGTGAACCTCTAAACCCGGATAAGCGAGTTGCTAGTTACGCAAGTGCAGGAacggAAAACCAGCCAATATTTCTGTTCAGCAAGTCAACAATCCAATCACCACTGCCTCCGTCACCCAGTGTCAACCTTGGATCGGAGCAATCATTAAAAGATGAGATTGATCGCTGTTTGAAGTTGCCTCCTGTGTACGAAACGCTTGTGGCAAGAGCCAAGTTAGCTTCTGATTTCCAGACATATGCTCTGGAATTGGGAGAAAGTTGCGAGAATTTGATAACTGATCAGAACTTTCAGAGCGAAGGATGGCAAGCGGCCATTGTGAACTTAGACCATATCACCACCGCATTTGAGAAGCATTTGGAGTCCTTTAAAGACAGCCACAGCGAGTTTGTCACCTCCCAAGTTCATTACAACACGATGCTGCAGAATTTCGGTTCTGTGCTTGACTTGCTGAAGCGCGTACCATTGCTTCCATCTCTACACAAGCAAGGCTCACAGATTTCGCTGTTGCAGTGGATAAGCGCGCACGATCATCAATCTTCACTGGAGAATCTTGTGTCACAATGCCAAGATGCTGTCCATCAGTTTAACTCTGAAGCCATCAGGATCATTGTGTCAGATGCTGAACTCGTCCTCGATTCTACGTACAGCACTAACATGAAAGAAATAAGAGGTCTCAAAGAACGATTGGTGAACCTGCAACATCGTCTCGAAATGGCTAAGCGACTTGTGCAAGACCAATGCGACATGGCTCagGGATTCCAGCAGAATCGGCAACGAGCGGCAAATCTTGGTGACTCATCCATCCTCCCAGATTTATGTTCGAGTCATCAGAAGCAACTGTACGTGCTCATGAAGAACCATCACAGGCTGAGGGAAATACGGAATGTTTGCGCGCGCGCCAAGGATGAGCTATCCGTCAACCTCCACACGAGATTAAAATGGGTGATGGCGATCGAGAAGCAACTTTGCGCGTGCAACAGCAAAATCCTCGTCTTCCACGATTGCTTGAAACGAATCAAGAAACGACTGGACATTTTTGAGCAGGTGTACGAAGCGCCCAGGCTGTATGTTTTGGCTGTTGTCGAGGCAACGAGAAGGAAGAGCTTTTCAAAGCAGTTTTATGAGTGGTCGAGATCGGTCTCTGAGAGTTCAAAGTCCACCCGTAAAGACGAGCTCAACAAACGACAAATTTTCCATCGTGTTTTCGGGCGGCATTTTATTCAGAATTTGTTCCCGGGGTTGGATGAAACACCGCAGCCATTTGCTGAGGAAGCGATTAAAATGTGCGACGACATCCTTCCAGACATCAGCGCGTGCGACATTCAAATACTGCAGGATCACGCTCCAGAGCTGATGAGCGAGTTTGCGGGCGCACAAATACGCTCGTGCGTGTCTCCCAACGCGCGCGACAAATTCAAGCAGCAGATGACGATGAGTGTGCTGAAGCGAGAGATTACCGACAACTTCCCCGTCCTCGACAACGTCGAATTTCAGGTGGGTTCGTCTCCCGACGAAGAAGATTATGAGCCGATCTCCTTGCGATCTCTCTCCGACAAGCTGAAGATTTCCGATGATAGTGATACCCTCTTCCAATCGGCTGAGCTTGAACTCCCCTCTTTAAACTCTTCCCCTGAGAAGTCTATTTCCTCGCCAATCGCAATACAGACGGCGCGGAAGTCTTTCTCCGACTCACATGACAATCACGTTCCCACCTTGGCTTCGTCATGCCGCAAGCACGTGAAAACGAACAGTTTGTCACTGGCTGACGCCATAAAATCCAGCGAAGTCAACGAGAACATATCGCATTCAGCGGAGCTCGTTAAAAACGCTAAACACGAGGTGACCACGCTAAAATCACGTTTGCGGCACGTGCAGGAGGACTTCCGCAACATTCATCAAGCTACTAATGACGAACTGAACAACGTGAGAGAGAAGCTGTTGGGTTTGTGCAAAGCTCAACTGACCTGCGAGAATTGCGTGAAGCTGCAAAACGAGAGACAAAACTACGAAACAAATCGCATCGCTTCTTTGGAAGAAGTGAACAAAGCCCTAAGGGACGAACTGAGGTCGGTGATGTTAACGCTCGATGATAAATGCGCGGATGTTAAGGAGAAGACGGACATTGTGAACGCTTTGAAGTTAGAGATAATCGATCTGAATGCCGCGATTGAAACGCGCAAATACGAAGCGAACGAGTGTAAAGAACGCGCGGACAATTTATTGCGAGTGTCGAATGCAAAAGATTCGTTGGTGGAGAATCTACAACGGGATGTCGAGCGATACGCGGAAGAGACGAAAAATCGAGAGCGCCAACTTCAGGCTTCCCAAGACCACATTTGCACCCTAAACCTTCAGATCAAAGAGCTGAACAAGAAGCAGAAGGAAGATATTGACTGCATCAGGCAAGTGAGCTTCAACCAGGTGCTTAATAAAGTGAAGAGAGAGAAGCAAACATCTATAGATGATCTGCAGGGGAGATTGGCTGCTTCCGAGAAGGATGTATCCGCTCTGAGGTTGAACGTGCAGCGTCTTCAACAGGAAATCTCCACGCACAAGGATGGCTACAATTTGTTGGAAGTAGAGGCGCAGAGAGACAAGCAGAAAATGAACGAGAAACTAGTGCAAATGAAATGCGACAACAACGAGTTGAAAGATGTATCGCGTACGCGCTGCGAGAAATTACAGCGCGAACTTTCTGACGCGCGCGAGAGCTTGGACGCGGAGAAGGTGAGAATCACGCGAGAGATGAAAGCGCGTTATGATGCTGATCTGGCTAGTGAGAGAGCTTCCATATTGCTGGCGTGCGAAGTGGAAAAGGAATCCGTGATCGAAAAGTACGGACGGCCGGAACATGTTTTGACACGAGAAAGTAGCTCGTTGGAGGAAGGAATCGACGAGTTGGAGATCGACCGTCTCTCAGAGAAAGTGACCTTTTTAGAGGACGagaatttaaaactgaaaaaagcCATTGAAAAGCAGCCTGACGTGGTCGATTATATGGAGAGGCTGCGGAATGTGAAAGTGTCTTGTAGGAAAATTATCGAAGGCGCGGTCGTTGTGTTAGTATTCGATGACGTCACCAAACAGTATGTCGCCCTTTCGTTGAGCGAGACAAAATGCTTTGCTCACCCAGAAACAATTCAACAACTTTTTGCTGggAAAACTACCGAACAGCCATGGCCTTGGATGCTGGCGGAAGTGCTCAAGATTGAATGGTGCATGACGAAGAAGGCGAGCAACAAATATCACTTGCCCACCGATGCCACTTTCATGAGGGTTTACGTGAAACCGTATTCCCCTAGCAACAGTCCTTCTGTTGCCTAGCCAACGTGGAACGGTATGtgaaagtgtgtttttgagGGACATTCCAGCgtgagaaaaccgtgttgttctTTTTATATGAGACAGAGAAATGCTGTTCCTTTTTTGTTTCGATATTTGACATTTAAAATTAGTGCTTGGATGTGTGCAAATGTATATATTGATGTTGTAATGCAATAACGTTTGTTATTTATGGaattacaaaacaagaaatgatGTTGTGGTTATTTGGAACTTTTGGAAACTATTGGTAATTGTCGCCGATTCTCGATTACGATAGTTTCAAAGTATCTGTCTAGACTGTCTacattaaaacccaaaaatttcggcgggAAAAAAGTTCGCCGAATATTTTTGTGCTGAAATTTCGAGttcgccgaaatttttggattttaataacttttcatgatatacttattttcaaaaacttataaaaaaaaaacttaaattatGCTTAACTGAATACAGTACACTGAAGCCTATCCTAAGCGAATACAGTACACTGAAGCCTGTCCTAAGCGAATGTACG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003971 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04108 all species →	ATG17_like	Autophagy protein ATG17-like domain	Domain	Interproscan
PF10377 all species →	ATG11	Autophagy-related protein 11	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045326 all species →	Domain	Autophagy protein ATG17-like domain	Interproscan
IPR019460 all species →	Domain	Autophagy-related protein 11, C-terminal	Interproscan
IPR040040 all species →	Family	Autophagy-related protein 11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13222 all species →	RB1-INDUCIBLE COILED-COIL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0001934 all species →	Biological Process	positive regulation of protein phosphorylation	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0030242 all species →	Biological Process	autophagy of peroxisome	Interproscan
GO:0034045 all species →	Cellular Component	phagophore assembly site membrane	Interproscan
GO:0034727 all species →	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0061709 all species →	Biological Process	reticulophagy	Interproscan
GO:0061723 all species →	Biological Process	glycophagy	Interproscan
GO:1990316 all species →	Cellular Component	Atg1/ULK1 kinase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17589	RB1CC1; RB1-inducible coiled-coil protein 1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Candelabrum cocksii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Candelabrum cocksii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →