Gene detail

Detailed information of ENSQNNP00000027525.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: XP_047123361.1, mutS protein homolog 5 isoform X2 [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q19272	MutS protein homolog 5 OS=Caenorhabditis elegans OX=6239 GN=msh-5 PE=1 SV=2
Q6CSR1	DNA mismatch repair protein MSH3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=MSH3 PE=3 SV=1
A6ZTR3	DNA mismatch repair protein MSH3 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=MSH3 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002875 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05192 all species →	MutS_III	MutS domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045076 all species →	Family	DNA mismatch repair MutS family	Interproscan
IPR007696 all species →	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR036187 all species →	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361 all species →	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0051026 all species →	Biological Process	chiasma assembly	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQNNP00000027525.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.