Gene detail

Detailed information of ENSQNNP00000028136.1 in Candelabrum cocksii

Genomic Location: chr8:13912014...13917697
NR annotation: XP_002161815.3, methionine--tRNA ligase, cytoplasmic [Hydra vulgaris]
Species Candelabrum cocksii · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSQNNT00000029225

GTCAAGCAACCGTAAATTGCATTATTTCTGTTGACACAtcacttttctttatttaataaCAAACATTGTGAGGACATATAAAGCCCTGATTCCTGTACAATAACCGAAACTCTATGCATTTGATTGCGAACTTTACACACTAGatatttggACGGCAAACGCTCGTAGCATTACAAAGGGTTGGCTTGCAGAAGGTCTGAAACCACGTTGCATCACAAGGGACATAAAATGGGGCACGCCTGTCCCAATGGAGGGTTACACAGACAAAGTCTTCTATGTGTGGTTTGATGCAACAATCGGTTACATGTCGATCACTGCAGGATATACAGATAAATGGGAGCAATGGTGGAAAAACTCAAAGAAGGTTACGCTGGTTCAATTCATGGCAAAGGATAACATTCCGTTCCACACAGTCGTATTCCCATCTTCACTGATTGCAGCAGATGACAAACACACACTGCTCAGTATGATCAGCTCAACGGAGTATCTGAACTACGAGGATGACAAGTTCTCGAAGAGTCGTGGCGTGGGAGTGTTTGGTGATCAAGCCAAAACCACCGGTATCCCGGCTGATATTTTCCGCTTTTATTTGCTGTATGTGAGACCAGAGAGTCAGGACTCGTCTTTCCAATGGGATGATATGATATTAAAACACAACTCTGAACTCCTCAACAATATGGGCAACTTTATTAACAGAgctttgatgtttttaaagaacAATTTCCACTCCATCATCCCCGCGATGGACTTAAACGACGatgattatttatttctcGCAAGTGTGAACAGGGATCTAATTGCATATGTGCAACAATTGGAAAGAATGAAACTGCGCGACGGCCTGCGATTGGTTCTAAACATCTCGCGGTCTGGTAACCAGTACATGCAAACACACAAACCTTGGAATCTCATTAAAGGAGAAGTGGAAGATAGGTCACGTGCAGGGACTGTGATTGGTTTAGCGACTAACGTCTCGGCACTTTTGGCGCTACTCATTCAACCTTACATGCCTGAAATCAGCAAGCAAATTCAAGCGCAACTTTCTTTGCCCCAGGACCGTCTAGTCATTCCAGACCACTTTGCCCCTTTGCTTGAGGCGGGACATAGGATAGGAACACCTTCGCCTCTCTTTCAGAAGCTGGAAGCTTCGTTCGGGGAAATGATAAAGAAGAGGTTTTCTGGTGTAAAGAGTCAAACGccACATCCGGAAACCTCTGAAATACATACACCTGCCACCACTGCTACTACTACAGATGCTGCAAACGTTGCGGATCTTGAGGCTGAGGTTGCCAAACAGGGCGGTATTGTACGGAACGCCAAAGCGAACAAACATCCTAAAGAGCAGATTGACATGGAAGTAAAAAAGTTGTTGGCGTTGAAAGAAAAGCTGGATATGGCACAAGGAAAGCTTCCCAGTGATGCGTCgaaatcgaaaaagaaaactggcaaaaagaagaagaagtaaCAGAGATATATCTAGCAGTTAGTTAAATAGGCGATATGTAAGTAGAGTTGAGAATGTAGAGGTGTAATCGTATTCAAAATCAAGGTATTTTATGTGTGGCAAGCGTATGAAGAGCATAAAAGTGTGGTTAAGTGTTGATGGTCGGTGTGGTGCCCGCCTCAAAagataacattttttataacgAAAAGAGggcaccctcgtttacgcccgttacaaACATTAGAGTTAACCCAACttctttcattttgaaaataacgtgACTCTCCGCAAACTGTTTTCCACTGAAATTAAAAAGCCAAAATTGCTTTCCATAAAAATCTCTTTTGCTTATCTCGAGTACATATCCTTGCTAAAttgaaaattacaattttttgtgTAAAGACTATGTAGTTTCATAGAATGAAaccaaaaaatacaaaatttctttttcaaaattaggAGAACAAAACTTCTACTTCTCTGTATACTTCTGATTTCGCgtaacaaaacataaaaaattcttGCAAATATGGCTATCTATAACAACTAAATGTCTCACGCCGttcaaaataatataaaaagacaaataaataatatatataaataaaacaatgaatttataagaaaacctgtaaaaaaatgtttataaaaattttaaaaaaaataattgttccAGTATTTATAATCAATTTGGTGATATATACTCTTTGTAAGTTGTCAGACAAAGAAAGTGTTAATTTGCCGTATaataaaaaaggttaaaattcGTGCGTCAGATTGAGGCGTTTGTCGGTAGGTAATGTTGACAGTACATAGTCGTTGTCGGTTTTTGTCTTTAATGTCGAAAATACCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2T9L8	Methionine--tRNA ligase, cytoplasmic OS=Bos taurus OX=9913 GN=MARS1 PE=2 SV=1
P56192	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=MARS1 PE=1 SV=2
Q68FL6	Methionine--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Mars1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002200 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19303 all species →	Anticodon_3	Anticodon binding domain of methionyl tRNA ligase	Domain	Interproscan
PF09334 all species →	tRNA-synt_1g	tRNA synthetases class I (M)	Family	Interproscan
PF00458 all species →	WHEP-TRS	WHEP-TRS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041872 all species →	Domain	Methionyl-tRNA synthetase, anticodon-binding domain	Interproscan
IPR023458 all species →	Family	Methionine-tRNA ligase, type 1	Interproscan
IPR000738 all species →	Domain	WHEP-TRS domain	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR033911 all species →	Domain	Methioninyl-tRNA synthetase core domain	Interproscan
IPR015413 all species →	Domain	Methionyl/Leucyl tRNA synthetase	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR009068 all species →	Homologous_superfamily	uS15/NS1, RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45765 all species →	METHIONINE--TRNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004825 all species →	Molecular Function	methionine-tRNA ligase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006431 all species →	Biological Process	methionyl-tRNA aminoacylation	Interproscan
GO:0017101 all species →	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQNNP00000028136.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.