Gene detail

Detailed information of ENSQNNP00000028339.1 in Candelabrum cocksii

Genomic Location: not available for this species
NR annotation: MCI5060163.1, D-alanine--D-alanine ligase [Alphaproteobacteria bacterium]
Species abbreviation CCOCK · all data for this species · gene families

Sequence

CDS

Transcript

ENSQNNT00000029430

CTGGTCTTATGATTTACAGAGTTACAAAGCGTAGATGAGTGAAAAACGAGATACGATCTAGTGTTTTGGACAAATTGTGAATCACGCTGCGGTGGGAAATTGAAAGAGAAGTGACATGAGGAAAAAGGTGGCTTTACTTGTAGGGGGCTGGAACGTTGAGCGCGGAGTTTCtatcaaaaaaggaaaacatgTTGAGCGTGCTTTACTTGAGAACGGTTATGACCTCAATGTTATTGACGTTACTAaagatatttcaaaattaatcaaCGATCTCACTCCAAAACCAGATGCTGTTTTCAACAATCTCCACGGGCGTTTCGGCGAGGATGGAGTTATTCAGAGCCTTCTGACGTTGCTGGAAATTCCTTATACACATTCAAATGTTGTGGCATCAGCAATAGGAATGGATAAATTTATTACAAAGAAAATGGCACAAAGCGTAGATGTTCCGGTGCCCAAAGGACGCTTGGCCACAAAAGAAGAGGTGATGGCAGAATTAGTTTTGCCGCGTCCTTATGTTGTGAAGCCTTATAATGAAGGCTCTAGCTTTGATATTTATATCATCAAAGAGAATGACAATCATTTAGAGACTATCGGACAAAACTGGAATTATGGCGATCATGCTTTGCTTGAGGAGTACATTCCCGGGCACGAGCTAACAGTGACTGTATTGGATGGAAAGGCAGAAGCTGTCACTGATATTGTATCTCATACAGGTAGCTTTTTTGATTATGAAGCAAAATACGAGGATGAGCGAATAGAGCTTGTTTTACCGGCGAAAATTCCCCAAGATGTGTATGAAGCGGCTTTAGATTATGCCCAACGTGTGTACAATGTAATTGGGTGCAGTAGTTTGGCGCGTTGTGACTTCCGTTTTGAGGAGGAGAAAGGTCTTGACGGTCTTTATTTTCTCGAAATTAATACGCAGCCAGGACTAACCGCTGAATCAATTGGCCCAACACAATGTGCCTATAATGGCATGTCTTTTGTTCAACTTTGTTCTCATCTGGTGGAAACCGCAAAATGTCACGGCTTATCGTGATGTTCATAATGTgcttaaatataaatattattcttgtttatttCGATTATATTATGCGATATGCGcatacaaatttaaaacattgttgttttttacctTTTGCAGCATGGATAAAACATTTCGATCGCTCTTACTGGTATATATTTACGTAGGGACATTTCAATCGTGGTTTATATGCCGGCATGGGCAGTATTTGAACATGTGGAAAAATGTAATTGCGTCTATGTATAAAGAGAATAGTTGAAGCATTTTACTATTTGTAGTTATCTATTTGTCCGTGCGATACATAATACTTGGCGACGAGATAAAACCGAACGTCAACGATCATCTTTCAGCACCCGTTTCTGTTAAGTGTAACCGATGTCTATCGGAACAcggcaaaaattaaattcgATGCTCCATCGAGTCCAGCTcatgtatgtttttatgtatATGAGCTGTATCGATGTACATAGGTTACCACTGTACAGTAGTATAATCGCACATATCGTTATATTCTcagaatattattaaaaaatggcggatttttggtttgtttgttgttgtggtttttttttaatttgtatttttatatataccaTATTAAGATAGGGCATTGATTTTACTTACTTACTCTTACTTGTTCTGTTCATTCCCAGAAATATTGTTATAGTATTCTGATTGAATGCCTCAAATAAGTCTCTCcggcttatatatatatatatatatatatatatatgtatagtatctccaagtaaaactaCACCATTATAGCAACTTAAAGTTTCTTGCGTGAAGCATTTTTCAAGCTATACACTATGATGATAAATGTTTACAATCACTTCtgtaaaatggattttaaacgTTTATAATCACTTTAACGAGCGCAGCGAGTGTTTGTTTCTATGGCGACACTTGCTGATTAATTTGGTTCGTTTATTCAACAATCCCCTGGGTTCTGCACGgacaatacaaactttttctgCCAAGCATAAGTTGCAGACTCTTGAGCCAGGTTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0BV28	D-alanine--D-alanine ligase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=ddl PE=3 SV=1
A5FUL3	D-alanine--D-alanine ligase OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=ddl PE=3 SV=1
A4WQD9	D-alanine--D-alanine ligase OS=Cereibacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) OX=349102 GN=ddl PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0018256 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07478 all species →	Dala_Dala_lig_C	D-ala D-ala ligase C-terminus	Family	Interproscan
PF01820 all species →	Dala_Dala_lig_N	D-ala D-ala ligase N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011095 all species →	Domain	D-alanine--D-alanine ligase, C-terminal	Interproscan
IPR011127 all species →	Domain	D-alanine--D-alanine ligase, N-terminal domain	Interproscan
IPR000291 all species →	Conserved_site	D-alanine--D-alanine ligase/VANA/B/C, conserved site	Interproscan
IPR005905 all species →	Family	D-alanine--D-alanine ligase	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23132 all species →	D-ALANINE--D-ALANINE LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008716 all species →	Molecular Function	D-alanine-D-alanine ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0009252 all species →	Biological Process	peptidoglycan biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01921	ddl; D-alanine-D-alanine ligase	EC:6.3.2.4	Peptidoglycan biosynthesis and degradation proteins	ko01011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.