Gene detail

Detailed information of ENSQPTP00000001553.1 in Actinia mediterranea

Genomic Location: chr1:11917558...11924899
NR annotation: XP_031570767.1, UBX domain-containing protein 4-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSQPTT00000002016

GCCTTTTTAAACTTGATATTTGCCCAGTGACTATGACCTGCCATCCTCttcataattataaataagttAACTTTTGAACTGCATAGTGTAGGTCGTAAATTTTGATTCGTAAGAGTAGAAATAGCAGGAGTAATTTTAAGAGCTTTACGTCCTACAacggccgccatcttgatttACTATACAATCAACCTCACCAGGGGAGGGAACAATTTTAAAAGATGCTTTGGTTTAGTGGGAGTATACCAGAGGCTATAGTGTCATCCAAACAGCGGAAATTGCCTTTTGTGGTGTACATTGAAGGCGAAGATGATTCCTCAAATTCAATGAATACTGTCTGGGAAGACCCAAAGGTGACAGAATTATTCACAAGTGACAAGTGTGTTGCCATCAAACTGAAAAAAGACAGTGAGGAGTGTACACAGTTTTCACAGCTCTATCCTGTTGTCTGTGTGCCATCAGTATTCTTTATAGATCAGAATGGAATGCCTTTGGAGCTGGTAGGAGGGGTAGTTGGTGTTGATGAGTTTATTGGGAAAACAAGCACTGCATTTGAGacctttcaaaaacaaatatcCAGTGTCCAAGAAAGTATTCAGCCGGCCCCTCTAagcTCAACCTCAAATGCACAACAAGCTACACCTTCAAGCACAGTTGAAGAAAGAGTTGAGAGAGCAAAAAGACTAattgaagagaaaagaaaagaaaaacaagaaaaagaaaaaaggGAGCAACTTGAAAAGGAAACAAACCGGCGACAAGAAGGACAGGAACTAACAttagcaaaaaaagaaaaagaagatagGAAACAAAGAGAAATCGTTAATCAAATCCGGGAAgacaaagcaaaggaaaaggCAGCCCGCGAGGCCGTTCTTAAGCAAATCGCGCAGGACAAGGCTGAGAGAGAAGTGAGACGACAAAATGAACTGCGCGAACGAAAACTAGCACCAACGGTGGCAGATGTACCTTCAACAAGTCAAAGTGGATCAAGTGATTCGAGGACACCTACCAAACCAACAAGCACGATAACTCGTCTCCAGTTTCGCCTGCCTGATGGTAGCAGTGTAATGCACACATTCCAAGCAGACGCACTTCTAGAGGCAGCCAGACAGTTTATTGAGTCACAAATGGATTCAGGGTTCAATTCCATCACCTTGTCCACCGTTTATCCACGCCGACAGCTGACAGAAGAAGACATGAACATGACCTTGACTTCATTACAACTTGTCCCTAGTGCCACTCTGATCGTTTCTCCAGGAAGTTCTACATCTTCTGCAGTAGCTACGAGTAGTTCATCAGGTTTCTCGGGTATCGTCATGATAATTCTGGCACCATTCCTGGCAATCTATAACTTTGTCAAAGTGTTCATATTTGGTGGTTCAGACAACCCTAGGGGGTCATATGGTGGACAGAGCAACGAACCAAGAAGAGAGGAAGTCAAGGAAAGAGGAACTGACTCTAGCAACTTAAGAAGGCGCACTGGTAACCAAGGTATCGCAAACAAAGAAGGGAATATTCATCGCTTAAGAAATaaagacgatgatgatgatgaaaataacaCTTGGAACGGCAACTCCACCCAACAGATGTAGTTGTAAATAGCTTTgagattaaaattctagaagtTACGATATTCTATCGATGGGCCTCAGGTGATTTATTTGCCCCTATCTGCAGTGCCTGCTTCATTCAATGCAAGCACAACTTAGCACAATGATCAAAATTATCTGTTCTTTTCCTTGCGCTTGCTCTGCTATTGAAAACCAGTTTAGCTATTTTTTGACAGAAGCGAAGCCAGAAGCCCAGACGTCTTGGGATTTGCTGGTcttgaaataatgaaaatggGTATTCagctaattaaaaaaatgttgaatGCTGAATACTGcttactgaatagtgcattccaagaccacaGGGCATTGTAGGTCTcgttaatttaaaataaaaaaagtaaatatacggTTATACAGCAATTTGCTCTATATGTGTAGCTAGTATATTGTttcatagagtgcaaacaatataaccgtgaaactttagtaatactaaatagcacaatttcatccaaattccattgttttctattgtttaattagcacttttttgtactatttagtacttagtgtttcacggattgtTTGCACTCTTTGACATTTAGTGTGCAGTATTTTAGtattcaacattttttgaaatagctgtaagTGCAAAGTTATAGGGGATCATTGCGTTGCAAATAATTAAACTATTTATAAGAGCAATTTAGAACTGTCATGTGTTATGTTCATGGTACAATATACCACCAGCTTACTGTGAAATTTATCCACACAATTTACAGATAAACTCACAGGTTTTTTTGGATGACTAGGAAAATTGTGGTATTGACTTTCAGCATGGTTAGGTACACcaaaacactgaaatggccCAAATGGGACTACTGCACAGATTTATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VCH8	UBX domain-containing protein 4 OS=Mus musculus OX=10090 GN=Ubxn4 PE=1 SV=1
Q5HZY0	UBX domain-containing protein 4 OS=Rattus norvegicus OX=10116 GN=Ubxn4 PE=1 SV=1
Q3ZBU9	UBX domain-containing protein 4 OS=Bos taurus OX=9913 GN=UBXN4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003984 (this species only) · gene tree & orthology
Ubiquitin family	ULD\|UFD\|UBX · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789 all species →	UBX	UBX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001012 all species →	Domain	UBX domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46424 all species →	UBX DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24348	UBXN1_4; UBX domain-containing protein 1/4	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.