Gene detail

Detailed information of ENSQPTP00000001682.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031563003.1, PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000002180

atggaGGGTCTGGATCATGGTGGACTAGTCAATGAAgaatatcaagaaataaggacTATTTACAGCAATGGAAGAGAACCGATTGGACTTACAAATGTCGTGGTTGATCCCTTTGAAGAACTTATCTGGGCTGGAAACCAATCGGGTCATGTCACGTCTTACTTTGGACTCCAACTACAAAAATACACAGCTTTTCAAGCCCATCCCAGCGAGATAAGACACATGTTGATAGATGACAGAGGAATACTAACCCTCTCTTGTAATCATTTACGTTATGGGAAGAGAACAGGATTAAGAATATTCAGTTTAAGtgAGCCGAGCATGTGTAACCTACAGTGTATGCTACAAAGAGACAACAGCAACTTGCTGTTAGCTGGACATCAAGACCACATGATTGAAGTAGACCTTAAGACTGGAACTGTTACTGGAGAGGTTGAAGTAGATCCAGGCACAGTTGTAATGAAGTGGTCTTCTagatatatttgttgtggGGATACCAAGGGAAAGGTTACTTTACGTGATCCAGTTACCCTGCGATCAGAGCACGTTCTTGATGCACATTCTGGAACACTATCAGATTTTGATGTTTCTGGTAACCTGGTAGTGACTAGTGGGTTCTCTTCAAGGCATGGTCATTTGACAGTTGACAGATTATTGAATGTCTATGATTTAAGAACCCTCAGAGCTCTGCCACCAGTACAGGTCTCTATTGATCCTCTAATATTGAAGTTTCTACCATCCTTCACTTCACGCCTGGCAGTTGTTTCACAGTCAGGTCAGTTCCAGTTTTGCGAGCCTGGTGGTCACACAACGGCATCATCAATGTGTGTTTACGGCATTAATCCTCATGGGGGTTCCTGTACTGCTCTAGATGTGTCATCTAATTGTCATGCCATGGTGTTTGGGGATTCCAGTGGATACATGCATTTGTGGGGTGACACTAAAGTTGCGGATGTATCATTCAATGCGTATTCTGGGCCAACTGAGTTTGCTACAGAGGTACCTCACTCTCAGCCATTAGCTATAGATGACTATTCTGTTCCCCTTTCTTCATTCCCTCTACCTTATTCCAATGAACCCCTGTTTTCTGACTGGACGGCAGAACTGAGTGTGAGACAGAGCAGAAATCCCCTGCCAATTGACCCTGACATTCTTCGTACGATGGTCATACAGCAATTCATTGGACATGCACCAAAGccttcaaataaaaaaagaaaccagTGGCCATACCAAGCCAAAGCAGCAAACATCATGTCACAGACCAAGAAGAAAGATGATGTGGAAGTTCCTGAATCACCAATGAGTAGAGAGGACGACCCAACCATTATCATCCCAAAGGCATATCGTCGAGTAGAGATGAAATACTCAAAGTTAGGTTTAAAAGACTTCGACTTTGGTCATTACAATAAGACAAAGTTTGCTGGGTTGGAGATACATATTCCTAATGCTTACTGTAACGCTATGCTGCAGGTGTTGTATTTTATTGAACCATTGCGAGTCGGTCTGCAGAACCATATATGCTCTAGAGAATTTTGTTTGGCTTGTGAGCTGGGTTTCCTGTTTTATATGTTGGACCAGTCAACTGGTGCTCCTTGTCAGGCGAGCAACTTTCTGCGAGCATTTCGTACAGTTCCCCAGGCCTCAGCTCTTGGCTTAGTGTTGAACGATATAGAGGAATCCACAGGGAATGTCAATTATCCACGGCTCATTCAAAGCTGGATTCTATTCGTTCTTCAGCAGACACATCAGGATACATTGCGACCTAAAGTGGCCCCAGAAACGACCCCTGAGGAACTCCCTGAACAAACTCAAGAGAAAGCAGAGAACACATCGATTTTGGAGCATCTTTTTGGAGCTGAGGTGGAGCAGTGGAATAAATGTCGATGTGGAAAGAATAGTACACGAAAGTCATCTTCGCTGATTTATGATCTGGAATATCCCGATATGTCAGATAAACCACCAGCTACACCAGTGACCTTCGAATCCATCATTGAGGCTACTTTATGTCGCGAACAGTCAATGCAGGCTTGGTGTGATAAGTGTGGTCGTTATCAACCCACAGTCCAGACACGTAAAGTGACCTCCTTACCAGATGTACTGGCATTCAACTGTCACGTGGAACAGAACAGTGAAATTGATCTGTGGAAGGTTCAACAAAAGCTCCTGAGCGTCCCTCATCATGAAGAGAAACCAGCGCAAACCACTAAACCCTGTCGATATGGAGAAAACTGTACGAGGTCTGGCTGCAAGTTTCGCCATGATGTAGTGATAATCGAGCCTGAAGAGGAACCAAAGTCCTGGATTCCAATGGCGATCAAAATACAAACATCGGAAAGTGGTGAACTAGTGATCACTAAGATCGACGAAAATGACAAGAAAATCAAGTGTGGAGAGAATGAGGTCATCTATGATCTTCATGCTACAGTAGGGTATATACAGGACTCTAGGGTAGGAGGGGACCTTGTAGCACATGTTCATGTAGAGACCACGTACCATAGTAGGAAAGAGGGTGTTACGTGTGACCAGTGGTATCTGTTTAACGATTTCGCCATAACACCCATCTCCCCAATCGAATCTGTGGTATTTAACTTGGATTGGAAGGTACCTTGTAGTATAGCCTACATCAGAAGAGACATTAACAGCAGACATGATCTAAAACTATGTTCACCTATCGATGATAGCATTCTGTTCAGTAATCAGTCCGTTCGTTCAGATAAGGAATTTCAATCTCGTGCCTTTACTCGCCTCACACCAGATGAACTTCCAGTAGAAGGAACCATTGTTGCTCTTGATGCTGAGTTTGTGACTTTAAACCAGGAAGAAGCAGAAATCAGAAGTGATGGTACTCGATCTACCATTAAACCAAGCCAGATGAGTGCAGCACGTATAACAGTTGTACGAGGTGAGGGACCTCTTGAAGGCGTACCATTCATAGATGACTACATATCTACCTCAGAACAGGTCGTAGACTATCTCACAAAGTTTTCTGGTATCAAGCCTGGAGATTTAGACGTCAGCATCTCGTCCAAACACCTAACTACACTCAAAACTACTTACCTGAAGATACGAGCCCTAGCAGACCGCAAGGTCAAGTTTGTAGGACACGGCTTGAAGAAGGACTTTCGggttattaatattcttGTACCTAAAGCTCAAGTGTTTGATACAGTGGAACTGTTCCATCTGCCCAGACAAAGATATCTTTCTTTACGATTCCTGGCCTGGTACTTCTTAAGGCTCAACATTCAATCTCAAACACACGACAGTACAGAAGATGCTCGAACTGCATTGCAGTTGTATCGCAAGTACGTCGAACTGAGCCAAGATCAAGCAGAGTTCAAGAATGTGTTGAAACAACTATACGATGATGGAAGAAAATGTAATTTTAAAGTCGAAGGCAGCAGTGACGACTAA

Transcript

ENSQPTT00000002180

ctttgttttgaaaatggaGGGTCTGGATCATGGTGGACTAGTCAATGAAgaatatcaagaaataaggacTATTTACAGCAATGGAAGAGAACCGATTGGACTTACAAATGTCGTGGTTGATCCCTTTGAAGAACTTATCTGGGCTGGAAACCAATCGGGTCATGTCACGTCTTACTTTGGACTCCAACTACAAAAATACACAGCTTTTCAAGCCCATCCCAGCGAGATAAGACACATGTTGATAGATGACAGAGGAATACTAACCCTCTCTTGTAATCATTTACGTTATGGGAAGAGAACAGGATTAAGAATATTCAGTTTAAGtgAGCCGAGCATGTGTAACCTACAGTGTATGCTACAAAGAGACAACAGCAACTTGCTGTTAGCTGGACATCAAGACCACATGATTGAAGTAGACCTTAAGACTGGAACTGTTACTGGAGAGGTTGAAGTAGATCCAGGCACAGTTGTAATGAAGTGGTCTTCTagatatatttgttgtggGGATACCAAGGGAAAGGTTACTTTACGTGATCCAGTTACCCTGCGATCAGAGCACGTTCTTGATGCACATTCTGGAACACTATCAGATTTTGATGTTTCTGGTAACCTGGTAGTGACTAGTGGGTTCTCTTCAAGGCATGGTCATTTGACAGTTGACAGATTATTGAATGTCTATGATTTAAGAACCCTCAGAGCTCTGCCACCAGTACAGGTCTCTATTGATCCTCTAATATTGAAGTTTCTACCATCCTTCACTTCACGCCTGGCAGTTGTTTCACAGTCAGGTCAGTTCCAGTTTTGCGAGCCTGGTGGTCACACAACGGCATCATCAATGTGTGTTTACGGCATTAATCCTCATGGGGGTTCCTGTACTGCTCTAGATGTGTCATCTAATTGTCATGCCATGGTGTTTGGGGATTCCAGTGGATACATGCATTTGTGGGGTGACACTAAAGTTGCGGATGTATCATTCAATGCGTATTCTGGGCCAACTGAGTTTGCTACAGAGGTACCTCACTCTCAGCCATTAGCTATAGATGACTATTCTGTTCCCCTTTCTTCATTCCCTCTACCTTATTCCAATGAACCCCTGTTTTCTGACTGGACGGCAGAACTGAGTGTGAGACAGAGCAGAAATCCCCTGCCAATTGACCCTGACATTCTTCGTACGATGGTCATACAGCAATTCATTGGACATGCACCAAAGccttcaaataaaaaaagaaaccagTGGCCATACCAAGCCAAAGCAGCAAACATCATGTCACAGACCAAGAAGAAAGATGATGTGGAAGTTCCTGAATCACCAATGAGTAGAGAGGACGACCCAACCATTATCATCCCAAAGGCATATCGTCGAGTAGAGATGAAATACTCAAAGTTAGGTTTAAAAGACTTCGACTTTGGTCATTACAATAAGACAAAGTTTGCTGGGTTGGAGATACATATTCCTAATGCTTACTGTAACGCTATGCTGCAGGTGTTGTATTTTATTGAACCATTGCGAGTCGGTCTGCAGAACCATATATGCTCTAGAGAATTTTGTTTGGCTTGTGAGCTGGGTTTCCTGTTTTATATGTTGGACCAGTCAACTGGTGCTCCTTGTCAGGCGAGCAACTTTCTGCGAGCATTTCGTACAGTTCCCCAGGCCTCAGCTCTTGGCTTAGTGTTGAACGATATAGAGGAATCCACAGGGAATGTCAATTATCCACGGCTCATTCAAAGCTGGATTCTATTCGTTCTTCAGCAGACACATCAGGATACATTGCGACCTAAAGTGGCCCCAGAAACGACCCCTGAGGAACTCCCTGAACAAACTCAAGAGAAAGCAGAGAACACATCGATTTTGGAGCATCTTTTTGGAGCTGAGGTGGAGCAGTGGAATAAATGTCGATGTGGAAAGAATAGTACACGAAAGTCATCTTCGCTGATTTATGATCTGGAATATCCCGATATGTCAGATAAACCACCAGCTACACCAGTGACCTTCGAATCCATCATTGAGGCTACTTTATGTCGCGAACAGTCAATGCAGGCTTGGTGTGATAAGTGTGGTCGTTATCAACCCACAGTCCAGACACGTAAAGTGACCTCCTTACCAGATGTACTGGCATTCAACTGTCACGTGGAACAGAACAGTGAAATTGATCTGTGGAAGGTTCAACAAAAGCTCCTGAGCGTCCCTCATCATGAAGAGAAACCAGCGCAAACCACTAAACCCTGTCGATATGGAGAAAACTGTACGAGGTCTGGCTGCAAGTTTCGCCATGATGTAGTGATAATCGAGCCTGAAGAGGAACCAAAGTCCTGGATTCCAATGGCGATCAAAATACAAACATCGGAAAGTGGTGAACTAGTGATCACTAAGATCGACGAAAATGACAAGAAAATCAAGTGTGGAGAGAATGAGGTCATCTATGATCTTCATGCTACAGTAGGGTATATACAGGACTCTAGGGTAGGAGGGGACCTTGTAGCACATGTTCATGTAGAGACCACGTACCATAGTAGGAAAGAGGGTGTTACGTGTGACCAGTGGTATCTGTTTAACGATTTCGCCATAACACCCATCTCCCCAATCGAATCTGTGGTATTTAACTTGGATTGGAAGGTACCTTGTAGTATAGCCTACATCAGAAGAGACATTAACAGCAGACATGATCTAAAACTATGTTCACCTATCGATGATAGCATTCTGTTCAGTAATCAGTCCGTTCGTTCAGATAAGGAATTTCAATCTCGTGCCTTTACTCGCCTCACACCAGATGAACTTCCAGTAGAAGGAACCATTGTTGCTCTTGATGCTGAGTTTGTGACTTTAAACCAGGAAGAAGCAGAAATCAGAAGTGATGGTACTCGATCTACCATTAAACCAAGCCAGATGAGTGCAGCACGTATAACAGTTGTACGAGGTGAGGGACCTCTTGAAGGCGTACCATTCATAGATGACTACATATCTACCTCAGAACAGGTCGTAGACTATCTCACAAAGTTTTCTGGTATCAAGCCTGGAGATTTAGACGTCAGCATCTCGTCCAAACACCTAACTACACTCAAAACTACTTACCTGAAGATACGAGCCCTAGCAGACCGCAAGGTCAAGTTTGTAGGACACGGCTTGAAGAAGGACTTTCGggttattaatattcttGTACCTAAAGCTCAAGTGTTTGATACAGTGGAACTGTTCCATCTGCCCAGACAAAGATATCTTTCTTTACGATTCCTGGCCTGGTACTTCTTAAGGCTCAACATTCAATCTCAAACACACGACAGTACAGAAGATGCTCGAACTGCATTGCAGTTGTATCGCAAGTACGTCGAACTGAGCCAAGATCAAGCAGAGTTCAAGAATGTGTTGAAACAACTATACGATGATGGAAGAAAATGTAATTTTAAAGTCGAAGGCAGCAGTGACGACTAAATAGTTATCGCTATTTATATAACATTACAAGTCATACTAAATGCAAAGGATGTAAATGAACTTTAAAGAAATCAATAAAAGATTGTTCATATACTCAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F450	PAN2-PAN3 deadenylation complex catalytic subunit PAN2 OS=Gallus gallus OX=9031 GN=PAN2 PE=2 SV=1
Q504Q3	PAN2-PAN3 deadenylation complex catalytic subunit PAN2 OS=Homo sapiens OX=9606 GN=PAN2 PE=1 SV=3
Q8BGF7	PAN2-PAN3 deadenylation complex catalytic subunit Pan2 OS=Mus musculus OX=10090 GN=Pan2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003010 (this species only)
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929 all species →	RNase_T	Exonuclease	Family	Interproscan
PF20770 all species →	PAN2_N	PAN2 N-terminal	Repeat	Interproscan
PF13423 all species →	UCH_1	Ubiquitin carboxyl-terminal hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050785 all species →	Family	PAN2-PAN3 complex catalytic subunit	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR048841 all species →	Domain	PAN2-PAN3 deadenylation complex catalytic subunit PAN2, N-terminal	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR030843 all species →	Family	PAN2-PAN3 deadenylation complex catalytic subunit PAN2	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR028881 all species →	Domain	PAN2, UCH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15728 all species →	DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000289 all species →	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0004535 all species →	Molecular Function	poly(A)-specific ribonuclease activity	Interproscan
GO:0031251 all species →	Cellular Component	PAN complex	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12571	PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2	EC:3.1.13.4	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.