Gene detail

Detailed information of ENSQPTP00000002244.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031564139.1, protein Mdm4-like isoform X1 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000002901

cAAGACCTTGATGGGTTCCAAGTCAAGAACTATTCAGTTCAACAGAAACCATGGGATACAAGATATAGGAATGGATGATGATTGAAGTGGCTGTTAAATGTACTAGTATCAAGCGCCAAAGTCTCAAGTATCAAGGGAAAACCAGAGGAACGGTGAAGGGCTAGAAACATGTGCCAAAGTCAGGGTTGAATATGGGCAAGAAGGAATATGGAATTCAAAGAAGGGGCTTGCAATATCGTTGAAAAACCAAAGAGATACGCAACTGGTCTGGTTCGTCCTCGTCCTGAGTTAAAGGTTTTGTTAGAAAAAGTCGGAGCAACTGCCCCAGTTTACACAAAATATGAGGTAATAGAACATTTGAAGGAATATATCAATGATAAAAAGCTTGTTGACCCTAACAACCCAATGAAAATCAAATGCGAGGATGATgacattttagaaaaggttttTGGATGCAAGGAATTTTTCACAGAGAATGTTTGTGAATTGCTACATCATAATCTAGAATCAGTGAGTGATACTTCAGATGGAGAACTAGgaATAATATCACTTGAAAACACCAAAGAGCAAAATAACAAACGGAAAAGAGCAAATTTAACAGATGTGAGCAGTAGTAGTGGTGCTGGAAGCCCCCTTAATGTACCATTTGGTATTGGGTTTATCAGAAAAGGTAGCTTTGAAAGTAACGATGACTATTCTGATGGATCCAGGAGAAGTTCTTACTCCAGGAAGCCTGGATATGAAACCCCAGCCACTGCTGTGGTCAGTGATTCAGAAGATGAGATTGTTTTTACAAATGacaTAACAGACTTGGACACATTTTCTGTGGAGTATGAACCTCCAGAAACAAGTgacgaagaaaaagatgaagatgatTCAGATGAAGAACCtgcaataataatatcatCAGATGACAGTGACGAGGACCCTGGTGCCGATGGTGGGGATGAGTTTGATAATGAGGAAAATAGTGACAGTGAAGACTCATGGGAATGTTTGGAGTGTTGGACCATGAACCATCCAATGACAACCAAATGCTATAAGTGttggaaagaaagaagctTTGCACTGCAACAGTTCGTTAGGACTGTCTCAGCTCCTGTTGCATCCAATAATATCAGTATTCCAGTAATTCCTGTTATTCCAAGTCTTCAGCGGTGTAAAACAGATTTCCCATGTGTTCAAATCGACTCTGTCATCAATGCTGAAAAACAATCTCATCTCTCTGCTTCGCCAAGTTCTGCTACTGAATCATTAACTTTTCTAGCTGACAAAAAGATGCAAGTTTCTCTTTCTCGCTCTTCAAGCAGTTGTTCTAGTACTACACAGACTTCTTGTGACAGTGGTGTCTGTGTGTCCTCTTGTGAGACAGACACAGAGAAGACAATCTCTGTCAGTGTGATAAATAACCAACATGAAAAGTTGGATCAACAAGAACATTTAGATTCTAATGCTATATGTCTTGGTGCTAAGAAAGGAGATTCTTCCTCTGCTTTTAGTACGTATTCTAATCTGGTAATACCTGGAGCTACAACTTCTTTGCTTTCTTCTGATTTGCCTCCTGTCGCTGTGCCCTCCATGTCCTCTACCGAAAAAAATGCTACAGAACAACCGCTGTGTGTGATTTGTACAACTGCACCAAGGAATGCCAGCATTATACATGGTCGTTCTGGTCATCAGATTTGTTGTATCACATGTGCTGAAAAGCTAAAGGCAGCTAAGAAAAAATGTCCCGTTTGTCGCAGAAAAATTCACTATGTCATTAAGAACTTTCtgtagttttttctttcttatcgcTTAccttgaaattgtttttcaataatgtcAGTTTATTTACATTTACCTAGTTTCACCACACATACACATCATCATAAGTTGTTTACAAGAGGCACAGTTACTTATATAAAGGATCAAAAAATGAGAAGAGTTAAAATACAAGGaaatttctcttcttttttttttctttcaattttatttatttttccaaaCTATATAACTGCTTTCTTTTAATGAATTTAATGAATCCAATGATTCTTGTGGATCACTTTGTGTAGTTTGCTAACTTGTTGACTTTCAGCCTGTTTCAAGTTTCTGCGACCTAACCGACTAAAGATGTCTGGTGTTTGGACTCTGTCAATTTGCAACCATGAACCATCCAATGACCACCAAATTTGCAACAGGCTGTTTGCCTTCTAATCATGAGAGATAAATATTCCCACAAATCGAAAggctagagtacaaacactaaaagtgtgcaacactttgcactgtttaatagtaaatagtgctaattaagcaatagaaaacaataggattagcataatttagcagtatttagtggtatttatgttacacacttactGTATAGTGTTTGTGCTCTATTACCTATGGGAAAATGGTTGTTGAGTAATgggaataattattatttgagATCAGAATGACTTTGTACATTTTATTGTCTGAAGCCAAAATACCAGACATTTGGAGTTGGTTAGGTTACAGGAGCATGGACAAATGCATTCCTGTGTGTTTGATTCCTTGGCAtctgtgtgagtgtgtgtgcaTCAATTTGATTATTAATGGTTTAATgatgaatatatatttgtaatatAGTTTTAATAGCAATAATATAGTAACAATCAGTAGGTTGCACCCTATACTAACACTGTATGTACATGTAATCTAATCAGCGGTGCACAGCGGTGCCTTTATTCCCCATACTGTGTGCATTGGCATGTATGCATGTGTTGCAAATCCAAGATGTTGTCCATTTcatcc

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006295 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02201 all species →	SWIB	SWIB/MDM2 domain	Domain	Interproscan
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036885 all species →	Homologous_superfamily	SWIB/MDM2 domain superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR003121 all species →	Domain	SWIB/MDM2 domain	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR016495 all species →	Family	p53 negative regulator Mdm2/Mdm4	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46858 all species →	OS05G0521000 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0043066 all species →	Biological Process	negative regulation of apoptotic process	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan
GO:0007049 all species →	Biological Process	cell cycle	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10127	MDM4, MDMX; protein Mdm4	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.