Gene detail

Detailed information of ENSQPTP00000003199.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031573890.1, vacuolar protein sorting-associated protein 41 homolog [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000004029

atggcggacaagACTGAGgataaaaaagaagaagaggatGAAGAAGAAtcagaagaagaggaagaggaggaaCCAAAGCTCAAATATGAAAGATTGGGAAATGCAGTAAATGATATCctgaaaggaaaggagtgtgCAAGCTGTATGGCTGTACATTCAAAGtTTCTGGCGTTAGGTACTCATTATGGTGTGGTTCATGTCATGGATCACCTTGGCAACAACATAAGAAGCAAAGAATTCCCATCACATACAACTGCTGTAAACCAGATCAGCATTGACCAAAAGGGTGATTACGTTGCAAGCTGCTCTGATGATGGAAGGGTTGTTATTAATGGATTATACAGTTCTGAGAATAATGTACAGACTAATTTTGACACTCCCATTAAGGCTGTGGCACTGGACCCAGATTATTCCtcaaaacaagcaaaaatGTATGTCACTGGAGGAGAAAAGTTGATCTTGACAGAGAGAGGGTGGTTTAGGAACAAGACCACTGTGCTCCATGAAGGAGAGGGAGCCATCAGAACCATCAAATGGAAGTCCCATTTCATCGCCTGGTCTAATGATGTGGGTGTAAGAGTCTTTGATGTGAGCTCCAAGCGAGTAATTACATACATCAAAAGGGAACCAGGAAGTCCAAGACCACAGCTGTACAGATGTAATCTCAACTGGAGTGATAATGTGACTCTCTTGATTGGATGGGCAAACAGCATTACAGTTTGTGTGGTTAAAACTCGAGAGCAAGAGGTTCGTGACCTTCCTCCTCGCTATGTTGAAATTGTTGGCATTTTCAAGATGGATTATTTTATCAGTGGGATTGCAACTCTAGGAGATGACATAGTTATACTGTCATACCTGACTAACATTGAAGAGGGTGAAACTAAGAAAGTCGATAACGTATCTGCCAAGCGACCTCAACTCCGTATTTTGTCTACAAGCAGTTTGAAAGAACATGAAGAGATTTCAGCTGATGCTCTGTCCATCAGGGGATATCAACATTATCGTTGTGATGATTATCACTTGGAGAATGTAACAGAAGACAACCTGTTTTATATTGTCAGTCCGAAAGACATTGTTTTGGCTAAGCCCAGAGATATAGATGATCACATTGGCTGGTTGATGAGTCATAACAAATACGAGGAAGCATTATCAGCCGTAGAAGAACACCAGAAGGAAGTCAAGAAACATAATTATCAGGATATTGGGCGCGCGTACCTCAAGTCACTGATGGACGCAGAAAACTATGAGGAAGCTGCAAGaatgtgtgtgaaagtgttaAACGATGACAAGAAGCTGTGGGAAGACGAAGTGTACAAGTTTGCGCGGAAGAACCAGTTAAAGGCAATAGCACCATACATTCCAAGAGGAAACGTGAAGCTCAGCTCAGCTATTTATGAAATGGTTCTCTATGACTTCTTAAAAACTGATTACCAGAAATTCCAGGATCTAGTGAAAGAATGGCCAGCCGAACTGTACAGTGTTCAAGCTATTATTAGTGCTATCCAGGAGCAACTAGAAAAGGATCCCACCAATCGCTTACTACTAGAAACCATGGGAGAAATGTACACTCGACAAAAGCGATACGACAAAAGTCTGGCAATATTTCTAAGGCTTGGTCACAATGATGTGTTTGATCTAATTAAAGAACATAATCTGTTTAAATCTATTGAAGACAAGATTATCATGCTGATGGATTTTGCTCCATCGATAGCCACGAAGATGTTCATAGATAACTTGGACAAAGTCCCCGTTGATGAAGTTGTAAGCCAACTTAAAAAGCGCCCACAACTTCTTCATAAGTACTTGGATTCCCTTCTACAAAAAGATCCAGAGGCTGGTATGGATTACCACGAACTGCAAGTTGGTTTGTATGCCGAGTTTGATCGTGATCGTCTTCTGCCCTTTTTACGTAACAGTAACTACTACCCTCTGCAAAAGGCGCTGGCTGAGTGTGAACAGCGACATCTTATTCCAGAAATGGTTTTTCTTCACAGTCGCATGGGAAATAACAAGAAAGCTTTGCATTTGATAATTGAAGAACTAAGGGATGTTGAGAAGGCAATCGAGTTTTGCAAGGAACAGAGTGATGAGGATTTATGGGAGGATCTAATCCAGTGTTCTCTTGACAAACCAGcATTCATCACCAGCCTTCTTCATAACATTGGCACACACGTCGATCCTATCAAACTCATCAAGCGTATTCCAGCAGGTATGGAAATTCCTGGCCTAAGAGATTCGCTTGTCAAGATCTTGCAAGATTACAATTTACAGATCTCATTAAGAGAAGGCTGCAAGAAAATCCTTGTAAAAGATAGTGCCTCACTTATGCAGAGATTAAACAAAGTCCAACAGCGTGGTGTTAGTGTAGATGAAGAGACGACTTGCTCAGGGTGCCGTGCTTCAGTCATAGCTGAAGATAGTCGTAAGGCGTCCAATATCGCTGTATTTTTCTGTAAACACGTTTATCACGAAGACTGTCTGCCATCGTTTAGAGACGTGGGCCCGTTTTGCCACATCTGTACTGGACACAGCCAAGTAAAGAGACTGAAATCACTCAAAAGCCGCACTGGTTCAATGTACAAATAA

Transcript

ENSQPTT00000004029

CCTTCATTTcccaaaatggcggacaagACTGAGgataaaaaagaagaagaggatGAAGAAGAAtcagaagaagaggaagaggaggaaCCAAAGCTCAAATATGAAAGATTGGGAAATGCAGTAAATGATATCctgaaaggaaaggagtgtgCAAGCTGTATGGCTGTACATTCAAAGtTTCTGGCGTTAGGTACTCATTATGGTGTGGTTCATGTCATGGATCACCTTGGCAACAACATAAGAAGCAAAGAATTCCCATCACATACAACTGCTGTAAACCAGATCAGCATTGACCAAAAGGGTGATTACGTTGCAAGCTGCTCTGATGATGGAAGGGTTGTTATTAATGGATTATACAGTTCTGAGAATAATGTACAGACTAATTTTGACACTCCCATTAAGGCTGTGGCACTGGACCCAGATTATTCCtcaaaacaagcaaaaatGTATGTCACTGGAGGAGAAAAGTTGATCTTGACAGAGAGAGGGTGGTTTAGGAACAAGACCACTGTGCTCCATGAAGGAGAGGGAGCCATCAGAACCATCAAATGGAAGTCCCATTTCATCGCCTGGTCTAATGATGTGGGTGTAAGAGTCTTTGATGTGAGCTCCAAGCGAGTAATTACATACATCAAAAGGGAACCAGGAAGTCCAAGACCACAGCTGTACAGATGTAATCTCAACTGGAGTGATAATGTGACTCTCTTGATTGGATGGGCAAACAGCATTACAGTTTGTGTGGTTAAAACTCGAGAGCAAGAGGTTCGTGACCTTCCTCCTCGCTATGTTGAAATTGTTGGCATTTTCAAGATGGATTATTTTATCAGTGGGATTGCAACTCTAGGAGATGACATAGTTATACTGTCATACCTGACTAACATTGAAGAGGGTGAAACTAAGAAAGTCGATAACGTATCTGCCAAGCGACCTCAACTCCGTATTTTGTCTACAAGCAGTTTGAAAGAACATGAAGAGATTTCAGCTGATGCTCTGTCCATCAGGGGATATCAACATTATCGTTGTGATGATTATCACTTGGAGAATGTAACAGAAGACAACCTGTTTTATATTGTCAGTCCGAAAGACATTGTTTTGGCTAAGCCCAGAGATATAGATGATCACATTGGCTGGTTGATGAGTCATAACAAATACGAGGAAGCATTATCAGCCGTAGAAGAACACCAGAAGGAAGTCAAGAAACATAATTATCAGGATATTGGGCGCGCGTACCTCAAGTCACTGATGGACGCAGAAAACTATGAGGAAGCTGCAAGaatgtgtgtgaaagtgttaAACGATGACAAGAAGCTGTGGGAAGACGAAGTGTACAAGTTTGCGCGGAAGAACCAGTTAAAGGCAATAGCACCATACATTCCAAGAGGAAACGTGAAGCTCAGCTCAGCTATTTATGAAATGGTTCTCTATGACTTCTTAAAAACTGATTACCAGAAATTCCAGGATCTAGTGAAAGAATGGCCAGCCGAACTGTACAGTGTTCAAGCTATTATTAGTGCTATCCAGGAGCAACTAGAAAAGGATCCCACCAATCGCTTACTACTAGAAACCATGGGAGAAATGTACACTCGACAAAAGCGATACGACAAAAGTCTGGCAATATTTCTAAGGCTTGGTCACAATGATGTGTTTGATCTAATTAAAGAACATAATCTGTTTAAATCTATTGAAGACAAGATTATCATGCTGATGGATTTTGCTCCATCGATAGCCACGAAGATGTTCATAGATAACTTGGACAAAGTCCCCGTTGATGAAGTTGTAAGCCAACTTAAAAAGCGCCCACAACTTCTTCATAAGTACTTGGATTCCCTTCTACAAAAAGATCCAGAGGCTGGTATGGATTACCACGAACTGCAAGTTGGTTTGTATGCCGAGTTTGATCGTGATCGTCTTCTGCCCTTTTTACGTAACAGTAACTACTACCCTCTGCAAAAGGCGCTGGCTGAGTGTGAACAGCGACATCTTATTCCAGAAATGGTTTTTCTTCACAGTCGCATGGGAAATAACAAGAAAGCTTTGCATTTGATAATTGAAGAACTAAGGGATGTTGAGAAGGCAATCGAGTTTTGCAAGGAACAGAGTGATGAGGATTTATGGGAGGATCTAATCCAGTGTTCTCTTGACAAACCAGcATTCATCACCAGCCTTCTTCATAACATTGGCACACACGTCGATCCTATCAAACTCATCAAGCGTATTCCAGCAGGTATGGAAATTCCTGGCCTAAGAGATTCGCTTGTCAAGATCTTGCAAGATTACAATTTACAGATCTCATTAAGAGAAGGCTGCAAGAAAATCCTTGTAAAAGATAGTGCCTCACTTATGCAGAGATTAAACAAAGTCCAACAGCGTGGTGTTAGTGTAGATGAAGAGACGACTTGCTCAGGGTGCCGTGCTTCAGTCATAGCTGAAGATAGTCGTAAGGCGTCCAATATCGCTGTATTTTTCTGTAAACACGTTTATCACGAAGACTGTCTGCCATCGTTTAGAGACGTGGGCCCGTTTTGCCACATCTGTACTGGACACAGCCAAGTAAAGAGACTGAAATCACTCAAAAGCCGCACTGGTTCAATGTACAAATAAGAGAAATTTCATTGGCTAGGGATGGCGTGACTTAATTTGTGCATGACATGCTAGACATACCACAGTTATCGTGACAACTATTTCGCATTAGTTTGGGTTGATATCCGTTTCGTTGCGTGACGGAAGCGACTCCATTCCTTACAGGACATGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7F590	Vacuolar protein sorting-associated protein 41 homolog OS=Danio rerio OX=7955 GN=vps41 PE=1 SV=1
P49754	Vacuolar protein sorting-associated protein 41 homolog OS=Homo sapiens OX=9606 GN=VPS41 PE=1 SV=3
Q5KU39	Vacuolar protein sorting-associated protein 41 homolog OS=Mus musculus OX=10090 GN=Vps41 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004220 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00637 all species →	Clathrin	Region in Clathrin and VPS	Repeat	Interproscan
PF10367 all species →	Vps39_2	Vacuolar sorting protein 39 domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016902 all species →	Family	Vacuolar protein sorting-associated protein 41	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR000547 all species →	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR045111 all species →	Family	Vacuolar protein sorting-associated protein Vps41/Vps8	Interproscan
IPR019453 all species →	Domain	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12616 all species →	VACUOLAR PROTEIN SORTING VPS41	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0034058 all species →	Biological Process	endosomal vesicle fusion	Interproscan
GO:0046907 all species →	Biological Process	intracellular transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005770 all species →	Cellular Component	late endosome	Interproscan
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0009267 all species →	Biological Process	cellular response to starvation	Interproscan
GO:0016236 all species →	Biological Process	macroautophagy	Interproscan
GO:0030897 all species →	Cellular Component	HOPS complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20184	VPS41; vacuolar protein sorting-associated protein 41	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.