Gene detail

Detailed information of ENSQPTP00000003696.1 in Actinia mediterranea

Genomic Location: chr1:10477360...10492528
NR annotation: XP_031564669.1, tuftelin-interacting protein 11-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSQPTT00000004615

atggaggaagaggaagaagttGAATCTTTTGAGATCACCGATAATGATATCATGCATGCAGGTCTACTTGGCCTTGGCTTCAGGCCGTACAAGTCAAGTAAGAGATTAAAAGAGGAGGCTACATATGGTATGTGGGCAGAGTACGACTCAGATGAGGGTGACAGCTATGGCcgtggaaaaagaaagaaggattATAGCCGACCTCTTAGTTTCATTAGTGGTGGTGTTGTacagaaagggaagcagaatgaagaagatgaagaagaaaatgatgaCGACAAGGAAGAAAACAGTAGTGGAAGTGAAGAGAGTGAACACAAGAGTAGAACATTCAAAAGCAAGAAGTTGTTCAAAGGCAAAGGAGTGTCGTCATCATACAATGAACCTGGCAATGCAGCAACCCAAATGTATGCAAAAAGACTTCAGAAAACCGGAGGAAAAGAATTTGGATCATGGGAAAAACACACCAAAGGATTTGGAATGAAAATGTTACACAAGATGGGTTACCAACCTGGACAAGGTCTTGGAAAGGAGGGCAAGGGAAGAGTGCAGCCTGTAGAGGCATTCAAGAGAGAAGGAAGAGGAGCACTGGGCATGTATGGACCTGAGGTCAAAACTAAGGGGAAAATTCAATATgatgaagaggaagaagaggaCAAAAAGTTTAAAGAGAAGCTTCACCAGTGGAAGAAATCTTCAAAGACTGGAAAAGCTTCACCAAAGTACATTTACAAGACAGCAGATGAGGTCAAGGCTACAGGTGTGACTAAGAAAGGACCATCTGTCTCTTTGAAACACAGCAAAGTCAAGGTAGTTGACATGACAGGTCCAGAGGCTAAGATCTTGACGGGGTATGGTTCCTTGTCACAGCAACATGCTAAACCTGGTGAAATTCCAGCAACTACTACAGTTGAGGAAGCTGAAGCTGCTTTTGCAATGCCTGAACTGATGTACAACCTGAACCTCCTGGTAGACATGACAGAAACAGAGATTGTTCAAATAGACAAAGAACTGAAATTTGAGCAAGACATGGTAACCAACTTGAAATATGAGTCAGAAAGGATTGCCGAAGTAATAAACCAAGAAGATAAACAGATTAAAAGACTGACAGATGTCATGCAAGTGATTGACAGGTGCAGAGCTCACTCACTATCATCAATAGAAGATTCTTTGACCCTTCAAAAATGCGAGGACATGTTTAAACTATTACAAGATGAATTTCATGAGGAATATATGATGTATGAATTATCATCACTAGCAATACCCCTAGTATTTCCCTTGATAAAAGAATATCTGAGTAGATGGAGTCCACTAATAAACCCCACCTATGGACTGGATGTCTTTAAGACATGGAAAGATCTCTTACAAAGTGGCAAACCATCTGCATTTACTCTGTCACAAGGAACTCCTCTGGACACCAACAGCATGGACATCTATGAACAGTTGGTGTGGGAAGTATGGATGCCATTGATAAGAACAGCAGTCAGTATATGGAACTGTCGTGACAGTGATCCCATGATTACAGTAATAGAACACTGGCTGCCTCTTTTACCTCCGTGGGTTATTGAGAACATCAAGAATTTGTTAATCTTACCTCGATTACAGAGAGAAGTAGATGCATGGAATCCATTGACTGATGCTGTTCCAATACATGCATGGATACACCCTTGGCTGCCTCTTATGAAGGGTTGCTTGGAACCTCTGTATGCACCAATACGTTATAAACTTGCAACAGCTTTGACGAACTGGCATCCATCAGATCCATCAGCAAAGATGATTCTTGAACCATGGACAAAGGTGTTTTCAAAGGGGAGCATGGACGCCTTTGTTCTACGATCAATTTATCCAAAGTTATCCCAGTGCCTTTCTGAGTTTGTTATTAATCCTCACCAACAACACTTAGAGCCATTTCACTGGGTAATGACATGGAAAGGCGTGATTCCATTACAACATTTTGTCAGTTTATTGGAAAAACATTTCTTCCCTAAGTGGTTCCAGGTTTTACGGAACTGGCTGGCAAGTAATCCAAACTAtgatgaaataacaaaatgGTACAAAGGCTGGAAGACAATGTTTTCCGACGAGCTTCTGAACAACCAGTCCATAAAAGCCCAGTTTAACCGAGCGCTTGACGTAATGAATCAAGCGGTATCATCACCAGGGGAATACTTACAACCAGGAGCCAAGGAACACATCGCTTATCTCACAAGCATCGAAAGAAGAAAGGAGGCGGAAGCGGCGGCAGCTACAGCAGCCTTGGAAAGGTCAAGAGCAGAAGCAGCCCGACTGCAAGCAGCCAACCAAAATGTGCCTACCAATTTTAAAGATCTCATTCATAAAATGGCTGAGGATAACAACATAGTCTTCCTGCCAGTCCCTAACCGCCGCTATGAAGGAAAAACACTGTACACTTTAGGCAAGACAACCATCTATATCGACCAGGGAGTAGTGTTTGTACAAACTCAAGGATCATGGAAACCTATCTCTCTACAAGATCTGTTTGTTTTAGCCAAATAA

Transcript

ENSQPTT00000004615

AAATATATCGTAAGatggaggaagaggaagaagttGAATCTTTTGAGATCACCGATAATGATATCATGCATGCAGGTCTACTTGGCCTTGGCTTCAGGCCGTACAAGTCAAGTAAGAGATTAAAAGAGGAGGCTACATATGGTATGTGGGCAGAGTACGACTCAGATGAGGGTGACAGCTATGGCcgtggaaaaagaaagaaggattATAGCCGACCTCTTAGTTTCATTAGTGGTGGTGTTGTacagaaagggaagcagaatgaagaagatgaagaagaaaatgatgaCGACAAGGAAGAAAACAGTAGTGGAAGTGAAGAGAGTGAACACAAGAGTAGAACATTCAAAAGCAAGAAGTTGTTCAAAGGCAAAGGAGTGTCGTCATCATACAATGAACCTGGCAATGCAGCAACCCAAATGTATGCAAAAAGACTTCAGAAAACCGGAGGAAAAGAATTTGGATCATGGGAAAAACACACCAAAGGATTTGGAATGAAAATGTTACACAAGATGGGTTACCAACCTGGACAAGGTCTTGGAAAGGAGGGCAAGGGAAGAGTGCAGCCTGTAGAGGCATTCAAGAGAGAAGGAAGAGGAGCACTGGGCATGTATGGACCTGAGGTCAAAACTAAGGGGAAAATTCAATATgatgaagaggaagaagaggaCAAAAAGTTTAAAGAGAAGCTTCACCAGTGGAAGAAATCTTCAAAGACTGGAAAAGCTTCACCAAAGTACATTTACAAGACAGCAGATGAGGTCAAGGCTACAGGTGTGACTAAGAAAGGACCATCTGTCTCTTTGAAACACAGCAAAGTCAAGGTAGTTGACATGACAGGTCCAGAGGCTAAGATCTTGACGGGGTATGGTTCCTTGTCACAGCAACATGCTAAACCTGGTGAAATTCCAGCAACTACTACAGTTGAGGAAGCTGAAGCTGCTTTTGCAATGCCTGAACTGATGTACAACCTGAACCTCCTGGTAGACATGACAGAAACAGAGATTGTTCAAATAGACAAAGAACTGAAATTTGAGCAAGACATGGTAACCAACTTGAAATATGAGTCAGAAAGGATTGCCGAAGTAATAAACCAAGAAGATAAACAGATTAAAAGACTGACAGATGTCATGCAAGTGATTGACAGGTGCAGAGCTCACTCACTATCATCAATAGAAGATTCTTTGACCCTTCAAAAATGCGAGGACATGTTTAAACTATTACAAGATGAATTTCATGAGGAATATATGATGTATGAATTATCATCACTAGCAATACCCCTAGTATTTCCCTTGATAAAAGAATATCTGAGTAGATGGAGTCCACTAATAAACCCCACCTATGGACTGGATGTCTTTAAGACATGGAAAGATCTCTTACAAAGTGGCAAACCATCTGCATTTACTCTGTCACAAGGAACTCCTCTGGACACCAACAGCATGGACATCTATGAACAGTTGGTGTGGGAAGTATGGATGCCATTGATAAGAACAGCAGTCAGTATATGGAACTGTCGTGACAGTGATCCCATGATTACAGTAATAGAACACTGGCTGCCTCTTTTACCTCCGTGGGTTATTGAGAACATCAAGAATTTGTTAATCTTACCTCGATTACAGAGAGAAGTAGATGCATGGAATCCATTGACTGATGCTGTTCCAATACATGCATGGATACACCCTTGGCTGCCTCTTATGAAGGGTTGCTTGGAACCTCTGTATGCACCAATACGTTATAAACTTGCAACAGCTTTGACGAACTGGCATCCATCAGATCCATCAGCAAAGATGATTCTTGAACCATGGACAAAGGTGTTTTCAAAGGGGAGCATGGACGCCTTTGTTCTACGATCAATTTATCCAAAGTTATCCCAGTGCCTTTCTGAGTTTGTTATTAATCCTCACCAACAACACTTAGAGCCATTTCACTGGGTAATGACATGGAAAGGCGTGATTCCATTACAACATTTTGTCAGTTTATTGGAAAAACATTTCTTCCCTAAGTGGTTCCAGGTTTTACGGAACTGGCTGGCAAGTAATCCAAACTAtgatgaaataacaaaatgGTACAAAGGCTGGAAGACAATGTTTTCCGACGAGCTTCTGAACAACCAGTCCATAAAAGCCCAGTTTAACCGAGCGCTTGACGTAATGAATCAAGCGGTATCATCACCAGGGGAATACTTACAACCAGGAGCCAAGGAACACATCGCTTATCTCACAAGCATCGAAAGAAGAAAGGAGGCGGAAGCGGCGGCAGCTACAGCAGCCTTGGAAAGGTCAAGAGCAGAAGCAGCCCGACTGCAAGCAGCCAACCAAAATGTGCCTACCAATTTTAAAGATCTCATTCATAAAATGGCTGAGGATAACAACATAGTCTTCCTGCCAGTCCCTAACCGCCGCTATGAAGGAAAAACACTGTACACTTTAGGCAAGACAACCATCTATATCGACCAGGGAGTAGTGTTTGTACAAACTCAAGGATCATGGAAACCTATCTCTCTACAAGATCTGTTTGTTTTAGCCAAATAAACACTTcaaatactccattttacagttccggtCAGTGATTACGAATACTAGAtccaagtcgaggttggagtttccgcgcatagcaaaactatagtTTATCATGCGTGGAAACTCCAACCTCGgattggaactattattcgtggtcactgaacggaactgtaaaatggagtattgatggtcttaaaatgtataaatattgttgAAAACTAAACACCTTAGAAAGGTATGTCAAATAGccttgaaattatttttcacaATGCGTAAattttactgaaaaataaacaagtggCAGTGTATTAAAAGAACTATATCGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66J74	Tuftelin-interacting protein 11 OS=Xenopus laevis OX=8355 GN=tfip11 PE=2 SV=1
Q0IIX9	Tuftelin-interacting protein 11 OS=Xenopus tropicalis OX=8364 GN=tfip11 PE=2 SV=2
Q06AK6	Tuftelin-interacting protein 11 OS=Sus scrofa OX=9823 GN=TFIP11 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004035 (this species only) · gene tree & orthology
Transcription factor family	GCFC · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12457 all species →	TIP_N	Tuftelin interacting protein N terminal	Family	Interproscan
PF07842 all species →	GCFC	GC-rich sequence DNA-binding factor-like protein	Family	Interproscan
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR022159 all species →	Domain	Tuftelin interacting protein, N-terminal domain	Interproscan
IPR022783 all species →	Domain	GCF, C-terminal	Interproscan
IPR045211 all species →	Family	TFP11/STIP/Ntr1	Interproscan
IPR024933 all species →	Family	Septin and tuftelin interacting protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23329 all species →	TUFTELIN-INTERACTING PROTEIN 11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000390 all species →	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0071008 all species →	Cellular Component	U2-type post-mRNA release spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13103	TFIP11; tuftelin-interacting protein 11	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →