Genomic Location: chr1:25078749...25081377
NR annotation: XP_001630130.1, tubulin alpha-1A chain [Nematostella vectensis]
Species Actinia mediterranea · all data for this species · gene families
| CDS |
| ENSQPTT00000005129 |
| Transcript |
| ENSQPTT00000005129 |
| Protein |
| ENSQPTP00000004135.1 |
| UniProt accession | Description |
|---|---|
| P02552 | Tubulin alpha-1A chain OS=Gallus gallus OX=9031 GN=TUBA1A PE=1 SV=2 |
| P68362 | Tubulin alpha-1A chain OS=Cricetulus griseus OX=10029 GN=TUBA1A PE=2 SV=1 |
| Q71U36 | Tubulin alpha-1A chain OS=Homo sapiens OX=9606 GN=TUBA1A PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000404 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03953 all species → | Tubulin_C | Tubulin C-terminal domain | Domain | Interproscan |
| PF00091 all species → | Tubulin | Tubulin/FtsZ family, GTPase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR023123 all species → | Homologous_superfamily | Tubulin, C-terminal | Interproscan |
| IPR036525 all species → | Homologous_superfamily | Tubulin/FtsZ, GTPase domain superfamily | Interproscan |
| IPR018316 all species → | Domain | Tubulin/FtsZ, 2-layer sandwich domain | Interproscan |
| IPR037103 all species → | Homologous_superfamily | Tubulin/FtsZ-like, C-terminal domain | Interproscan |
| IPR000217 all species → | Family | Tubulin | Interproscan |
| IPR003008 all species → | Domain | Tubulin/FtsZ, GTPase domain | Interproscan |
| IPR008280 all species → | Homologous_superfamily | Tubulin/FtsZ, C-terminal | Interproscan |
| IPR017975 all species → | Conserved_site | Tubulin, conserved site | Interproscan |
| IPR002452 all species → | Family | Alpha tubulin | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11588 all species → | TUBULIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000226 all species → | Biological Process | microtubule cytoskeleton organization | Interproscan |
| GO:0000278 all species → | Biological Process | mitotic cell cycle | Interproscan |
| GO:0005200 all species → | Molecular Function | structural constituent of cytoskeleton | Interproscan |
| GO:0005525 all species → | Molecular Function | GTP binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005874 all species → | Cellular Component | microtubule | Interproscan |
| GO:0007017 all species → | Biological Process | microtubule-based process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07374 | TUBA; tubulin alpha | - | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
