Detailed information of ENSQPTP00000004436.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031564405.1, TATA box-binding protein-associated factor RNA polymerase I subunit B-like isoform X3 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

 Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5ZJR9TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Gallus gallus OX=9031 GN=TAF1B PE=2 SV=2
Q9VH20TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Drosophila melanogaster OX=7227 GN=TAF1B PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004741 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11781
all species →		zf-RRN7Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7DomainInterproscan
PF20644
all species →		Rrn7_cyclin_NRrn7/TAF1B, N-terminal cyclin domainDomainInterproscan
PF20645
all species →		Rrn7_cyclin_CRrn7/TAF1B, C-terminal cyclin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR021752
all species →		DomainTranscription initiation factor Rrn7, Zinc-fingerInterproscan
IPR033599
all species →		FamilyRNA polymerase I transcription initiation factor TAF1B/Rrn7Interproscan
IPR048540
all species →		DomainRrn7/TAF1B, N-terminal cyclin domainInterproscan
IPR048538
all species →		DomainRrn7/TAF1B, C-terminal cyclin domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31576
all species →		TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0001164
all species →		Molecular FunctionRNA polymerase I core promoter sequence-specific DNA bindingInterproscan
GO:0001188
all species →		Biological ProcessRNA polymerase I preinitiation complex assemblyInterproscan
GO:0005668
all species →		Cellular ComponentRNA polymerase transcription factor SL1 complexInterproscan
GO:0006360
all species →		Biological Processtranscription by RNA polymerase IInterproscan
GO:0042790
all species →		Biological Processnucleolar large rRNA transcription by RNA polymerase IInterproscan
GO:0070860
all species →		Cellular ComponentRNA polymerase I core factor complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15213TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B-Transcription machineryko03021deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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