Gene detail

Detailed information of ENSQPTP00000005067.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031554019.1, histone deacetylase 3-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000006199

ctTAGTGAAGGATGAAGTCTTTGATAGAATGATGGTTAAAATACTCGATTTTAAAGCCATGGAAAAGACTCTGTCTTCATATTTATAGCTCATCGGTATGGCTAAGTCCACGGTGGTGTACTtctacgacgaagacgtaggaAATTTTCACTATGGACCAGGACATCCCATGAAACCTCACAGACTAACACTGACACACAACCTTGTCTTTAATTATGGGCTGCATAAGTATATGGAGGTGTATAAGCCATACAGAGCCACAGGCCATGATATGTGCCGATTCCATGCTCAAGATTATATACAGTTTTTATCCAGGGTGACTGTAGATGACATTCCTAGGTTAACAAAAAACCCTAGTAGTTTTAATGTGGGTGAGGACTGcCCAGTTTTTTCAGGTCTATTTGATTTCTGTTCTATTTATACTGGTGCTTCATTAGAAGGGGCTGTGCGGCTTAATCAAAGGGTGTGTGATATTGCTATTAACTGGGCCGGAGGACTACACCATGCCAAGAAATGTGAGgcATCAGGATTCTGTTATGTCAATGATATCGTAGTAGGAATACTAGAGCTATTGAAGCACCACAATAGAGTTTTATATGTAGATATTGATATTCATCATGGAGATGGAGTACAGGAAGCTTTTTATTTAACAGACCGTGTTATGACTGTGTCTTTCCATAAATATGGTAACCACTTCTTCCCAGGAACAGGAGATATGTATGAAGTTGGTGTGGACAGTGGAAAGATGTATTCCATAAACGTACCCTTAAAGGATGGCATTGATGATCAAAATTATGAGAGCTTATTCAAGCCAATCATAACCATGGTTGTTGACCATTATCAACCAAGTGCAGTTGTTTTACAGTGTGGAGCAGACTCCCTAGGCTGTGATCGGCTGGGATGTTTTAACCTTAGCATCAAGGGCCATGGGGAATGTGTACGTTTTATGAAGTCTTTTAACCTGCCAATGCTAGTTCTAGGTGGAGGTGGATATACCATTCGAAATGTAGCAAGATGTTGGGCGTATGAGACATCATTACTATTAGATCAAGATGTATCAACTGAGATCCCTTATAATGATTACCTGGAATACTTTGGGCCAGACTTTTCTCTTCATCCAGACATTGCATCAAGAATAGAAAACCAGAATAGCAAACAGGTTAGCTGAAAATGACTTTTACGACGGCGAACAAGACATCGATCGAGACTCGCCGTCTCTGGAAGTTTGAAGACTAAGTTTGCTTCTGATGTAGAACGACACTTTTTACTTGTTCATACAGATGCCCAACTAGAAGCTAACAGATATGATGTCCATCACATCAGTCAGGGCTAGGAAATGAGCGATGTGGTCCCAAAACATACGCTGAGGAACGCCATTTCAAATCTCTCCATATGACATGTGATAAGAAACCAACAACCACCTCTTATCTCAATTACTCCAGCTTTATCAAAGAAGTGATAAGTGATGTGGTCCCATAACATACCTTGAGGAACGCCTTTTCAGATACTTCGCCGTTCTTCCATCGCGTGGTGATATATCCTTCTACGTTGCTTTTCCAGTTTTAGATAAGAAACTTTTTATTAATGCATTCATCTACTCATACGTGTGTGTCATAAAGACTTCTGATGCCACAGGAAGTCCAACTCACTTTATCCTTTTTTCCCTTGATTTCATTGCGTTTTCAGACGATAATGAATATCATGcgttaaagtatttttttgaaacaacATGACTAAAAGTtaggaaataaaatatatccaAGTGACTAACCATATTTCATTCTCATAGCTTTCGGTGGATTAGCTTTTAATCAGGATAGATTTCGCAATAGGCTTTATTATTTTGCGTCGACTGTCgtagaaaaaattcaaacgaAATTTGCGCATTAAATTGGAAGAGTCGTGTTTGGATAACAACAATGGTAGAGttcgttggttctctcctgtgcttcgagggttttcctccctccacaaaaatcaacttctaaattctaattcgatctatcGGTTGCCTTGTAGTTGAGTCCTAGCCCTGTAAGGCTTTCCGTCCACCTCAGagtggtaaagttatataAGTGAGGATTCTAACTGCAATGCGTGTGGGAAAATGTATCTAGATTTCGTGTGCCTAACTCTGCGCATTTTCATAATTATCTTCAGCCCGAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28DV3	Histone deacetylase 3 OS=Xenopus tropicalis OX=8364 GN=hdac3 PE=2 SV=1
O88895	Histone deacetylase 3 OS=Mus musculus OX=10090 GN=Hdac3 PE=1 SV=2
Q6P6W3	Histone deacetylase 3 OS=Rattus norvegicus OX=10116 GN=Hdac3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001189 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00850 all species →	Hist_deacetyl	Histone deacetylase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050284 all species →	Family	Histone deacetylase and polyamine deacetylase	Interproscan
IPR023801 all species →	Domain	Histone deacetylase domain	Interproscan
IPR000286 all species →	Family	Histone deacetylase family	Interproscan
IPR003084 all species →	Family	Histone deacetylase	Interproscan
IPR037138 all species →	Homologous_superfamily	Histone deacetylase domain superfamily	Interproscan
IPR023696 all species →	Homologous_superfamily	Ureohydrolase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10625 all species →	HISTONE DEACETYLASE HDAC1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004407 all species →	Molecular Function	histone deacetylase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016575 all species →	Biological Process	obsolete histone deacetylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11404	HDAC3; histone deacetylase 3	EC:3.5.1.98	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.