Gene detail

Detailed information of ENSQPTP00000005188.1 in Actinia mediterranea

Genomic Location: :...
NR annotation: XP_031563824.1, eukaryotic translation initiation factor 4B-like isoform X1 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSQPTT00000006335

ATGGCGGAAACAGgTGGGAAAAAAGGCAAGAAGAAAAAGGGGAAAACTTTGAACTTGTTGGAGTTCTTGAACGATAACCAGACGTCTGCTGTATCACTTGGACCGGTTTTAAAATCTACCTCTAGTTGGGCAGACGAGAGTGAGGATCTCGCTACAGATGTTGATAACAGATGGCAGGACGACTCCTATGGAAGCAGTTCAGCAAAACGCCAAATGAATTTGGCTGCCCTTCCTACAGCGCCAAGAGCATCCCTTGAAACACAGATTGACTACAGTAAAATACCGGAGCATCCACCATTCACTGCCTTTCTTGGAAATTTGCCATACGATATAGAAAAAGAAGATATATTGGCTTTCTTCAGTGACATCAAGATAACAGAAGTCCGATTACCTCAGGATTCAGGCGGTGGCAGAGCAAAAGGCTTTGGGTATGCAGAGTTTGCTGATAAGGAATCGCTTGTCCAAGCACTATCAATGAACAATGAGaCATTACAAGCGAGGAAAATAAGAATTGACATAGCAGGACAGAATCAAgGAGGTGATAGAGACAGAAgtgataaagatgatggtCCAGATATGACAATGGGTGACTGGAGAGCACAGCCTGATGAACCCTCGTCAAGGTCTGGTAGTCGTTATGGCTCAAGTAATGGTTACCAAGACCGCTATTCCAGGGACAGAAGAGATGATGGATGGGGAAGAGACAGTGACAGGGGTCGTTatcatgattatgatgatcgACGTTATCCAGATTCCTTAGATGAACGAAGACCAAGAAATCACTATAACTCTAATCGTTATGGAGATCAGTATGACAACTATCGGCCTGGACGTAGTTATCAAAGAGATAGTTGGGGAAGTAAATATAACGAGAGAGACAGAAGGGATGGTCATGGTGGAGGGGATATGAATGATCCATATGCTGGAGCAGAGTTCACAAGAGATCAAGCCCGCCCACCAGTAGCTAAAGCACCATCTAGTCAAAATGGGGATAGTCAGAATGACCGAGAAGATAGAGGTGACCAGGATGATGGAGGCAGTAGAGGATATGGTGACAGAGACAGGGGATATGGTGATAGAGACAGGGGATATGGAGACAGGGGATATGGAGACAGGGACAGGGGATATGGAGACAGGAGCAGGGGATATGGTGATAGAGACAGGGGTTATAACGATAGAGGCAGGGGATATGGTGATAGAGACAGGGGTTATGGTGATAGAGACAGAGGATATGGTGATAGAGACAGGGGTTATGGTGATAGAGACAGAGGATATGGTGATCGGGACAGACGGTATGGTGATCGCGACAGGGGGTATGGTGATCGTGATAGAGATTTTGGTGACAGAGATGGTTACAGGCGTGATTATGGAAGCAGAGGAGATGAAGATGATCATGAATCAGCGAAAGAAAGACCCAGGCTACAGCTTAAACCAAGAACCAAGCCAGTAGAAGAAGTAAAGCCAGTTCCAGCAGAATCTCGAAGTTCTATATTTGGAGGTGCCAAACCAGTAGACACTACagcaaaagaaaaggaaattgaagaaaaacttgaaaagCTAAAAGTTGAAGTTgatctaaaaaaagaaaaggaacgtGATGGTACATATGCTAGAGGAGAGTATAGAAGCCGTAGAGACAGTGGACGATCAAGTGAAGGGGAATCCCGTAGCCGTAAAGATAGCAGTAGGTCAAATGAAGATGAGGGGCCAGCAAGTAGTCGTGGGCGTAGGGACAGTGAAAAAtcattagaaaaagaaaaaacaccaACAAGCAAGGAGAGTCCACATGATgctcctcttcctcctcctgTTAATGTTTGGAAACAAAGAATGGATGCCCAGAAAGCAGGTACAACAAATGATCAACCAAAAGAAGAATCCACTGCTCAATCCAATGCTGAAAAACCAGTTATTGAAAAGACAGCAGAGAAGAAGCCCATAAGCTCAAATGCACCAACGTCTCCTGTTGGAAGAGGATCTAATCCCAAACAACATTCTCGAGGCAGCGAAAGAGGTGCTGCTAGAGGACGAGGCAGAGGAAGAGGAGATCATCACAGCAGAACACATGATGCTGGGGATGgaagaaataaagaagaaaagaaggaaagaaaagagaaaagagcaccagaattaaagaaaattgaaGACCAACCTCCAGTGTTTCATCAAACCAGCAAGTTTTCACTCTTGAtggatgaagatgatgaagaagacgaAAATGAAAGTGCTGAAACTTAA

Transcript

ENSQPTT00000006335

CGTTGATCAAAATGGCGGAAACAGgTGGGAAAAAAGGCAAGAAGAAAAAGGGGAAAACTTTGAACTTGTTGGAGTTCTTGAACGATAACCAGACGTCTGCTGTATCACTTGGACCGGTTTTAAAATCTACCTCTAGTTGGGCAGACGAGAGTGAGGATCTCGCTACAGATGTTGATAACAGATGGCAGGACGACTCCTATGGAAGCAGTTCAGCAAAACGCCAAATGAATTTGGCTGCCCTTCCTACAGCGCCAAGAGCATCCCTTGAAACACAGATTGACTACAGTAAAATACCGGAGCATCCACCATTCACTGCCTTTCTTGGAAATTTGCCATACGATATAGAAAAAGAAGATATATTGGCTTTCTTCAGTGACATCAAGATAACAGAAGTCCGATTACCTCAGGATTCAGGCGGTGGCAGAGCAAAAGGCTTTGGGTATGCAGAGTTTGCTGATAAGGAATCGCTTGTCCAAGCACTATCAATGAACAATGAGaCATTACAAGCGAGGAAAATAAGAATTGACATAGCAGGACAGAATCAAgGAGGTGATAGAGACAGAAgtgataaagatgatggtCCAGATATGACAATGGGTGACTGGAGAGCACAGCCTGATGAACCCTCGTCAAGGTCTGGTAGTCGTTATGGCTCAAGTAATGGTTACCAAGACCGCTATTCCAGGGACAGAAGAGATGATGGATGGGGAAGAGACAGTGACAGGGGTCGTTatcatgattatgatgatcgACGTTATCCAGATTCCTTAGATGAACGAAGACCAAGAAATCACTATAACTCTAATCGTTATGGAGATCAGTATGACAACTATCGGCCTGGACGTAGTTATCAAAGAGATAGTTGGGGAAGTAAATATAACGAGAGAGACAGAAGGGATGGTCATGGTGGAGGGGATATGAATGATCCATATGCTGGAGCAGAGTTCACAAGAGATCAAGCCCGCCCACCAGTAGCTAAAGCACCATCTAGTCAAAATGGGGATAGTCAGAATGACCGAGAAGATAGAGGTGACCAGGATGATGGAGGCAGTAGAGGATATGGTGACAGAGACAGGGGATATGGTGATAGAGACAGGGGATATGGAGACAGGGGATATGGAGACAGGGACAGGGGATATGGAGACAGGAGCAGGGGATATGGTGATAGAGACAGGGGTTATAACGATAGAGGCAGGGGATATGGTGATAGAGACAGGGGTTATGGTGATAGAGACAGAGGATATGGTGATAGAGACAGGGGTTATGGTGATAGAGACAGAGGATATGGTGATCGGGACAGACGGTATGGTGATCGCGACAGGGGGTATGGTGATCGTGATAGAGATTTTGGTGACAGAGATGGTTACAGGCGTGATTATGGAAGCAGAGGAGATGAAGATGATCATGAATCAGCGAAAGAAAGACCCAGGCTACAGCTTAAACCAAGAACCAAGCCAGTAGAAGAAGTAAAGCCAGTTCCAGCAGAATCTCGAAGTTCTATATTTGGAGGTGCCAAACCAGTAGACACTACagcaaaagaaaaggaaattgaagaaaaacttgaaaagCTAAAAGTTGAAGTTgatctaaaaaaagaaaaggaacgtGATGGTACATATGCTAGAGGAGAGTATAGAAGCCGTAGAGACAGTGGACGATCAAGTGAAGGGGAATCCCGTAGCCGTAAAGATAGCAGTAGGTCAAATGAAGATGAGGGGCCAGCAAGTAGTCGTGGGCGTAGGGACAGTGAAAAAtcattagaaaaagaaaaaacaccaACAAGCAAGGAGAGTCCACATGATgctcctcttcctcctcctgTTAATGTTTGGAAACAAAGAATGGATGCCCAGAAAGCAGGTACAACAAATGATCAACCAAAAGAAGAATCCACTGCTCAATCCAATGCTGAAAAACCAGTTATTGAAAAGACAGCAGAGAAGAAGCCCATAAGCTCAAATGCACCAACGTCTCCTGTTGGAAGAGGATCTAATCCCAAACAACATTCTCGAGGCAGCGAAAGAGGTGCTGCTAGAGGACGAGGCAGAGGAAGAGGAGATCATCACAGCAGAACACATGATGCTGGGGATGgaagaaataaagaagaaaagaaggaaagaaaagagaaaagagcaccagaattaaagaaaattgaaGACCAACCTCCAGTGTTTCATCAAACCAGCAAGTTTTCACTCTTGAtggatgaagatgatgaagaagacgaAAATGAAAGTGCTGAAACTTAATACAATCAGCTATaaatgattaataataataaatactttTGGAAGTCATGTTCCCAAAGTTGTATCAGCCACTTCTACACCTGTCAGTTTGACTGGCCATCATGATTGTAATGGAAAACTGGAACAAACTTTTAATGTTTATCAAATTCCTATTTTATTCTGACTTTTGCTTGTGATTTTCTTAAATTATAGGAATTCAATCGATCGATTAAAGAATTTACATTGTCGTAGTAAGACTGAATGCAAAGTATCATGGTCTGAGGTCGAACACTCGTTAcatatattatcatcatccaaTCATTTATTTGCCAACACTTTATTTGTTTCTTATCAAttgaatttcctttttttctgtaaagaAAGCAATTCTTGGTTGTAACTATATCAATCATGGTAGTGTACAGTTACCTAAAGATTTTTTCGTTTAGTTATGTACACCATTATGGCTGCTATGTTTTTGAGCTTCAGTTCCTGTAGGAATGATTGGAATTAACCaagaataattattattgtagtTTCCTAAAGCTGCTATGCTTCTTTCATTGGATATTATTTTATGcaataaaatgaattattgGTCTATGTACAGCGTTTTTACTGGTGGAACCCCTTTTGCTTTATTGGCCGTCTTTCGTTAGGCTGGGTGCATCAAGATGCACACAGGCTATCTTTCTTATGGTACAAGAGAATTTTGCTTGATCAAAGTGATCATCAGATGGACTGCTGCAAATTTCGGGGGGGGtttactcccctatatttgctatacgagtatgtgccgccctatggggtatggtttttctgcttttgggtctggggtagggtataattttttgacattttgtctgggatagggtatcattgttgtctgggatagggttacgaTTTCGCTGTTTTTGTTTGGCAAATAGGCAACAAAAgattgcaatctattgaaTAACCCCATCTTTTCCATGTCAACAAAAGATAATATGACCAAGATGTAGCTAACACTACTGTTTG

Protein

Uniprot

Uniprot term	Description
P23588	Eukaryotic translation initiation factor 4B OS=Homo sapiens OX=9606 GN=EIF4B PE=1 SV=2
Q8BGD9	Eukaryotic translation initiation factor 4B OS=Mus musculus OX=10090 GN=Eif4b PE=1 SV=1
Q1JPH6	Eukaryotic translation initiation factor 4H OS=Bos taurus OX=9913 GN=EIF4H PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR033107	Domain	Eukaryotic translation initiation factor 4B, RNA recognition motif	Interproscan
IPR051847	Family	RNA Processing and Spliceosome Component	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45880	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005686	Cellular Component	U2 snRNP	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03258	EIF4B; translation initiation factor 4B	-	Translation factors	ko03012	deepkoala