Gene detail

Detailed information of ENSQPTP00000005265.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031551233.1, histone deacetylase 4-like isoform X1 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000006421

ATGGATGCTGGTGATTCAGAAACCTCAGGTAGCAGAGCTGTCACAGGAAAAACACCTGTTATGCCAATACCTAGTCAGTACTTGAAGCAATATTATGCACAAGCTATGGGTGATAATTACTCTCCTCCTCAGGAAGGCCCTAACATGCCATATATCTTAACACCTGCACAACAGCAGCTTGCAGGAATTTTACAGTTtaaacaacagcagcagcagcttgAGCAACTGCATGGAGTGCACCAGCCACAATATTTACAACAACAGTTACTATACATACAGCAGCAACATTTGctacagcagcaacaacaacagcaacagcagcatgAACTCAACTACAGATTAGAGATGCAACAGCAGGCTTTGAATGGCCATCAccacaaacaaaagaaatttgaGAGAGACCACAACAATCAGTCCTCCATGGAGCATGACAAGCCAATACCTCCTAAACCAAAGATTAAGGTTGAACCAGAAGATGAACCAGCCCAGAAAGAGGAGGAGGTACTGATGGACCAGGATGAAGATGCAGTGAACAGAATGTCAAAAGAAGACCATAACAAATCCTTATCACAGCCCAAACCACCCCACCTACCACCTGCGACCTCATCAGCTGCCTCACCATCTTCAGCATCATCCCAAACAGCACAAGAATTGACATCCAGTGCAGTCAAGAAAAAGTTGCAAACTTTTGTATTAAATAAGCAACAGAGAGAGTTAGCAGTAGCATCCCTTACCAATGACTCTGCCTTCAAACACTGGAGTCAAAACATGGACAAGGAAGGTGACAATCTTGGTCCTCTGGGCTCTCATCTTGATGCAAACCATTTTCCTTTGAGAAAAACAGCTTCTGAGCCAAACCTGAAAGTCAAGTCTCGCCTGAAGGCTAAAGTGGCCGAACACAGGACGATAGGCAGCCCTCTACTACACAGGCCACATAGAAATGGAAATAAGTTGCACAGAAGTATGACGTTGGAGACAACAGGAAATGAAAATGCAGATCGTTCTAATCCAGGTTCTCCTACTCAATCAGTGTCAGCTTCTCCAGGAAGagagCGTTCTTCTCCATTGGGAGCACCTGGATCTACCTTTGGGCACAGTCTTCCTAACCTCCAAGCTATTCCACGACTATCAGCCAATATAGACCGTTCACATATCAGTAAACTCTTGGCCAATCGATATCATTTCCTCAATCACGCAAGTCTTGCAAGTCAAGGCATCAGTAATGACGCtgaatttcaaagtccgtATGCTAATGACGCGCTGTACGACAGCAtggaagaagatgatgatagtaGTCTTAACGCTGCTGCTTTGAAACAAGTCCAGTTCAAAAATCTTGCACTGGCAAAGGCTCAGAGTAAAATGCTGGGGCTATCTGGTGGCCATGTACACAATTCGAACTCACTTCTCAGCCGTGGACAGCACCCCTCGTTAACGGGAAGGGGATCACCACCATCTCAAAACAACCTTCTTTCCATTCCTAAATCAACTCTGTCACCAACTTCACAAGCATCGTCTCTGCATCACCGTCCTCTTAGGCTCACTCTTTCAGCACCTGGGTACTCCATATCGAACAATCCCCAGCTTCAGCAGCAGCAGAtattaaaacaaaatcaagagcttctgcaacaacaacagcactTACAGTTCTTACAGCAACAGAGGCTCCAGCAAAGTCAATCGCTCTACCTAAAACAGCTACAGCAAGATCTTCTGATGCAGCAGCTAGGTAAGCAGAACTTTCCTAAAGTTCCACAGCCAGAAAAAGAATCCCGTGGTACCTTGAAGGATCACTTAGAAATGCTACAGTTCCAGAAAGAACAGGAACAAGCGGTTCTAAAAGAAAAGGCTTACCAGCAGCACAAGAAAGAACAACAGCTAGCACAAGCAGCAAGAACCACTGAAGACCTTCCAACATCAAGACCCTTGAATGAGCAACAGATTCAAGAGCTTTTGTTAGTACAGCAGTTTCAGCGGCAAGACCCTCACCAGAGAGGAATGCTGCAGCAACAGCTACTTCAACATCAGCAGCTTCTACAGCTGCGTCAAGCTGAAGTACAGGCTGCACCATCCGCTGCTTCTGCCTCTCCTAGTGCTTCTATAGGACACAGACCCTTGGCTAGAGCTATTTCTCTACCTGCAGTCGGAAGCGGCCAGGCAGCAACACCGACTACCCGTACGGGAATAGTATATGACACACTTATGCTAAAGCATCAATGCTCTTGTGGTGATACCAGCTCTCATCCAGAACACCCCGGCCGTTTACAGAGCATTTGGGCACGTCTTCAAGAGACTGGTGTAACAAACATATGCGAACGTGTACGACCCAGGAAGGCAACACTTGCAGAGATCCTTACCGTCCACAGtgaacaACATACCATGCTGTATGGTGGCAGTACTCAGTGTAGAACCAAAGCAGAAGACGGGACCATAACCACCCTCAAGTGTTTCAATACCTTACCCTGTGGAGGGATGGGGGTTGACGGTGATACTATTTGGAACGAGATACATAGTGCTAATGCTGCTAGGATGGCAGTGGGTTGTGTTGTAGAGTTAGCCTACAAGGTTGCAGAAAAAGAACTAAAGAATGGTATGGCAATTGTCCGTCCACCTGGTCATCACGCTGAAGCTCATCAAGCTATGGGTTTCTGTTACTTCAACAATGTCGCTATTGCTGCTAGACTTCTGCGACTCAAGATGTCAGTAGAACGAGTCTTAATCGTTGACTGGGATATTCACCATGGTAACGGTACACAGCAGATGTTCTATGATGATCCCCATGTCTTGTACATTTCCTTACATCGTCATGACGACGAGACATTCTTTCCTGGTACTGGGAAGTCAGAAGAGTGTGGAGCTGGTATTGGTGTTGGATATAATGTCAATATTGCATGGAATGGTGGATTAGATCCACTATACGGTGATGCAGAGTATTTGGCAGCCTTTAGATCAGTAGTCATGCCCATTGCCAGGGAGTTTGATCCTGAGATCATTCTAGTATCAGCTGGTTTTGATGCTGCTACTGGTCACTCACCTCAGCTTGGAGGTTACAAAGTAACTGCTGCATGTTTTGCGCAGTTAACTAAACAGCTGATGGAACTAGCTCAGGGTCGACTCGTTATGGCTCTAGAGGGTGGTTACAGTTTACCATCCCTATGTGATGCCGCAGAAGCCTGTCTAAGGGGATTGTTAAGTCAAGAGCTGCCAGAAGTACCGAAGGAAAGCCTGACGAGACCGCCTAACCCTAACGCTGTGGCTGTACTTGAGAAGACTATTGCCATTCAAAGTCGGTATTGGAATTCAGTCAAGAGAACTGGCTCTCTAATAAACCATTCAGTGGTCGAAGCTCAGCAGAGGGAGAAGGAGGAATTAGAAACTGTATCCGCCTTGGCATCATTATCCATGGCGCCGGGTGTGGTTCAAGATTCAGATAAAGCCACTGACGACCAAATGGAGGTACAGGACGAAAGCTGA

Transcript

ENSQPTT00000006421

GTCAAAACTTCAACTAAAGGAAGAACTCTGATTGGACGACGAAGACGTTTTCAGAAACTAATACCACCATGAAAGATAAGGTTTACCTCCCACACTCCGAGTGAGAAGGAAACCACTTTAACATTGCGAAACGAAAGGgATTGGAGATATCCATCCGTGAGCCGCAGTAGGCTTGGGAACATTCGAAGTTCGCTATATTTTTTCCGAAGAACTCGAGCGCTTCCACTCAACTGCAATGTGATGCTCAGTCATACATCTAATGGATGCTGGTGATTCAGAAACCTCAGGTAGCAGAGCTGTCACAGGAAAAACACCTGTTATGCCAATACCTAGTCAGTACTTGAAGCAATATTATGCACAAGCTATGGGTGATAATTACTCTCCTCCTCAGGAAGGCCCTAACATGCCATATATCTTAACACCTGCACAACAGCAGCTTGCAGGAATTTTACAGTTtaaacaacagcagcagcagcttgAGCAACTGCATGGAGTGCACCAGCCACAATATTTACAACAACAGTTACTATACATACAGCAGCAACATTTGctacagcagcaacaacaacagcaacagcagcatgAACTCAACTACAGATTAGAGATGCAACAGCAGGCTTTGAATGGCCATCAccacaaacaaaagaaatttgaGAGAGACCACAACAATCAGTCCTCCATGGAGCATGACAAGCCAATACCTCCTAAACCAAAGATTAAGGTTGAACCAGAAGATGAACCAGCCCAGAAAGAGGAGGAGGTACTGATGGACCAGGATGAAGATGCAGTGAACAGAATGTCAAAAGAAGACCATAACAAATCCTTATCACAGCCCAAACCACCCCACCTACCACCTGCGACCTCATCAGCTGCCTCACCATCTTCAGCATCATCCCAAACAGCACAAGAATTGACATCCAGTGCAGTCAAGAAAAAGTTGCAAACTTTTGTATTAAATAAGCAACAGAGAGAGTTAGCAGTAGCATCCCTTACCAATGACTCTGCCTTCAAACACTGGAGTCAAAACATGGACAAGGAAGGTGACAATCTTGGTCCTCTGGGCTCTCATCTTGATGCAAACCATTTTCCTTTGAGAAAAACAGCTTCTGAGCCAAACCTGAAAGTCAAGTCTCGCCTGAAGGCTAAAGTGGCCGAACACAGGACGATAGGCAGCCCTCTACTACACAGGCCACATAGAAATGGAAATAAGTTGCACAGAAGTATGACGTTGGAGACAACAGGAAATGAAAATGCAGATCGTTCTAATCCAGGTTCTCCTACTCAATCAGTGTCAGCTTCTCCAGGAAGagagCGTTCTTCTCCATTGGGAGCACCTGGATCTACCTTTGGGCACAGTCTTCCTAACCTCCAAGCTATTCCACGACTATCAGCCAATATAGACCGTTCACATATCAGTAAACTCTTGGCCAATCGATATCATTTCCTCAATCACGCAAGTCTTGCAAGTCAAGGCATCAGTAATGACGCtgaatttcaaagtccgtATGCTAATGACGCGCTGTACGACAGCAtggaagaagatgatgatagtaGTCTTAACGCTGCTGCTTTGAAACAAGTCCAGTTCAAAAATCTTGCACTGGCAAAGGCTCAGAGTAAAATGCTGGGGCTATCTGGTGGCCATGTACACAATTCGAACTCACTTCTCAGCCGTGGACAGCACCCCTCGTTAACGGGAAGGGGATCACCACCATCTCAAAACAACCTTCTTTCCATTCCTAAATCAACTCTGTCACCAACTTCACAAGCATCGTCTCTGCATCACCGTCCTCTTAGGCTCACTCTTTCAGCACCTGGGTACTCCATATCGAACAATCCCCAGCTTCAGCAGCAGCAGAtattaaaacaaaatcaagagcttctgcaacaacaacagcactTACAGTTCTTACAGCAACAGAGGCTCCAGCAAAGTCAATCGCTCTACCTAAAACAGCTACAGCAAGATCTTCTGATGCAGCAGCTAGGTAAGCAGAACTTTCCTAAAGTTCCACAGCCAGAAAAAGAATCCCGTGGTACCTTGAAGGATCACTTAGAAATGCTACAGTTCCAGAAAGAACAGGAACAAGCGGTTCTAAAAGAAAAGGCTTACCAGCAGCACAAGAAAGAACAACAGCTAGCACAAGCAGCAAGAACCACTGAAGACCTTCCAACATCAAGACCCTTGAATGAGCAACAGATTCAAGAGCTTTTGTTAGTACAGCAGTTTCAGCGGCAAGACCCTCACCAGAGAGGAATGCTGCAGCAACAGCTACTTCAACATCAGCAGCTTCTACAGCTGCGTCAAGCTGAAGTACAGGCTGCACCATCCGCTGCTTCTGCCTCTCCTAGTGCTTCTATAGGACACAGACCCTTGGCTAGAGCTATTTCTCTACCTGCAGTCGGAAGCGGCCAGGCAGCAACACCGACTACCCGTACGGGAATAGTATATGACACACTTATGCTAAAGCATCAATGCTCTTGTGGTGATACCAGCTCTCATCCAGAACACCCCGGCCGTTTACAGAGCATTTGGGCACGTCTTCAAGAGACTGGTGTAACAAACATATGCGAACGTGTACGACCCAGGAAGGCAACACTTGCAGAGATCCTTACCGTCCACAGtgaacaACATACCATGCTGTATGGTGGCAGTACTCAGTGTAGAACCAAAGCAGAAGACGGGACCATAACCACCCTCAAGTGTTTCAATACCTTACCCTGTGGAGGGATGGGGGTTGACGGTGATACTATTTGGAACGAGATACATAGTGCTAATGCTGCTAGGATGGCAGTGGGTTGTGTTGTAGAGTTAGCCTACAAGGTTGCAGAAAAAGAACTAAAGAATGGTATGGCAATTGTCCGTCCACCTGGTCATCACGCTGAAGCTCATCAAGCTATGGGTTTCTGTTACTTCAACAATGTCGCTATTGCTGCTAGACTTCTGCGACTCAAGATGTCAGTAGAACGAGTCTTAATCGTTGACTGGGATATTCACCATGGTAACGGTACACAGCAGATGTTCTATGATGATCCCCATGTCTTGTACATTTCCTTACATCGTCATGACGACGAGACATTCTTTCCTGGTACTGGGAAGTCAGAAGAGTGTGGAGCTGGTATTGGTGTTGGATATAATGTCAATATTGCATGGAATGGTGGATTAGATCCACTATACGGTGATGCAGAGTATTTGGCAGCCTTTAGATCAGTAGTCATGCCCATTGCCAGGGAGTTTGATCCTGAGATCATTCTAGTATCAGCTGGTTTTGATGCTGCTACTGGTCACTCACCTCAGCTTGGAGGTTACAAAGTAACTGCTGCATGTTTTGCGCAGTTAACTAAACAGCTGATGGAACTAGCTCAGGGTCGACTCGTTATGGCTCTAGAGGGTGGTTACAGTTTACCATCCCTATGTGATGCCGCAGAAGCCTGTCTAAGGGGATTGTTAAGTCAAGAGCTGCCAGAAGTACCGAAGGAAAGCCTGACGAGACCGCCTAACCCTAACGCTGTGGCTGTACTTGAGAAGACTATTGCCATTCAAAGTCGGTATTGGAATTCAGTCAAGAGAACTGGCTCTCTAATAAACCATTCAGTGGTCGAAGCTCAGCAGAGGGAGAAGGAGGAATTAGAAACTGTATCCGCCTTGGCATCATTATCCATGGCGCCGGGTGTGGTTCAAGATTCAGATAAAGCCACTGACGACCAAATGGAGGTACAGGACGAAAGCTGAGTCAACCAACgccaccctcccctcccataGAGCACCTTAACGTTACTATAATAACAATCGGTAGTGTATATAATACTATACTCAGTGTGGCAAGACCAAGTCATTGTCAGCTGTATTGTCTTTTATAAGGGTTCACTTTCCCATCTAAAATAATTTGATGTAGATATGACAATGGTATACAATTATAGTCTTTTAGCGTGTCAGACCAGACGTTAAATTATGCTCGTGGTACGTCGAGGAGCAGCCTGATAcgacacagggagcccaaactTGGCTTTCGTGCTGTCTGTTGTATATTATAGTATATTTGTGACCAAATCGCCTTAATCGTGCTCTTGCTCTTGTGTCTTTCTAATACCAACAACTTTTCTCATTAAGACTTCCAGTAACACTACCACATGAACCACATTGCCTTTTAAAAAGACTGAACTGAACGACTAAAGTAGGGATGTCGataatttcattcaaaattcaCATTCTGTAATTTAACAGCACGACAACCGtggttgggctgcctgtggaaaCTCACAATACTGTGGGTCAACATGttcgtctgtctgtctgtgtacATTGTATTTAGTGAAATCTGAAACCATAACCAAAGCCACCGATGAAAGCACTGACCTAGAACCTTGGGAATACTCTGTCATGCATTGATCCATGATAACCGTCATTTAACCATCTATTTATCATCTATGTATGTATCTAATGTATTTGAAATCGTTGTGAGGCTGATAGACTAGATGTGTGTATCTGACGAAAGTACGGTAACATGACTTTTGGATTGTGTGCACAGTAATGACCCAACAAAAAACTAGACTCAAAGCATGCACTGCTTGAAATCAAAATCCTTACAGTGCGTTTCCTTTGGATGTTTAAGCAAGTTAAGGTAAACATTTCAGCGTCAGCGAGTGTGTGTGTGACGGAAGAACCTTGACATCGCTTAGGCTTAATGATACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NZM9	Histone deacetylase 4 OS=Mus musculus OX=10090 GN=Hdac4 PE=1 SV=1
P56524	Histone deacetylase 4 OS=Homo sapiens OX=9606 GN=HDAC4 PE=1 SV=3
P83038	Histone deacetylase 4 OS=Gallus gallus OX=9031 GN=HDAC4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001139 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00850 all species →	Hist_deacetyl	Histone deacetylase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023801 all species →	Domain	Histone deacetylase domain	Interproscan
IPR037138 all species →	Homologous_superfamily	Histone deacetylase domain superfamily	Interproscan
IPR023696 all species →	Homologous_superfamily	Ureohydrolase domain superfamily	Interproscan
IPR050284 all species →	Family	Histone deacetylase and polyamine deacetylase	Interproscan
IPR046949 all species →	Family	Histone deacetylase 4/5/7/9	Interproscan
IPR000286 all species →	Family	Histone deacetylase family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10625 all species →	HISTONE DEACETYLASE HDAC1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000118 all species →	Cellular Component	histone deacetylase complex	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0004407 all species →	Molecular Function	histone deacetylase activity	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0016575 all species →	Biological Process	obsolete histone deacetylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11406	HDAC4_5; histone deacetylase 4/5	EC:3.5.1.98	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.