Gene detail

Detailed information of ENSQPTP00000005337.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031573478.1, sodium- and chloride-dependent GABA transporter 2-like isoform X1 [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000006501

GTAGTTACGTTAGGATAAGATTTGAGGTAGAATCGCTGGCTTGCTTTGTAAGTAAGGAAACCGCGTCTGCAGTTTATAACTGAGTAAAGATGACGGGAACCACCGATTCAAACCTCAACACCCCTAATGAAGATAAGGGAGAGGAAGAATATCTGACGGATTTTGAAGTCGAAGTCGATGAAGTTCCTCCAAGAGAGGCTTGGAATAATAAAATCGATTTCATCCTCGCTACGCTTGGGTACATAGTGGGTTATGGAAATTTTTGGCGTTTTCCTTATCTGTGCTACCGAAATGGAGGAGCCTCGTTTCTTTTCCCGTACATTTTGATGCTGTTTCTTATCGGTATTCCTTTGTTCTTCATGGAGCTTGCTATTGGTCAGTGGTACAATCGTGGTTTCATTAGCTTGTGGAAAGCTGTGTGTCCTCTCTCAAGAGGCCTTGGATACGCAACAATAGTAATGCAGTTTTTAAGTAGTCTGTATTATATAGTTATCCTCGCCTGGGTTCTGTTCTATTTCTTTGATAGTTTTCGTTCTGAGGTACCTTGGAGCGGCTGTGGTAACGACTGGAACACACCTTTCTGCAGAGTTGAACGAACATCCAACCAAGTGGTCAACTGCTCAGCTTTCAATCTTCCCGTCAACTGTACTCAGGAGTTCACATCGCCAAGTTCTGAATACTGGAACCGCCGAGTGCTTCAGATAACCGACTCGATTGAAGTAGCCGGCTCCATGAGGTGGGAACTGGTCGGTACGTTGATCCTCTCCTGGGTTCTTGTTTACTTTTGTATATTCAAAAGCATCAAACTCACTGGAAAGGTGGTTTATTTTACTGCTACATTTCCTCTCATCATGATCGTTGTCATGGTGATTCGAGGTGTAACCCTTGATGGAGCTGGTTATGGTCTTAGGTTTTACCTGAAACCTGACTTCAGGCGACTTGCTGATCCTCAGGTTTGGGTTTACGCATCAACTCAAATTTGCTGGTCTCTCGGGATTGGTTTTGGTGGAGTCATTACTTTCGGAAGTTTTAACACGTTTAGGAATAATGTTCACAGTGATAGTTTGATCGTTTCCTTGTCAAACAGTGGAACAAGTTTTCTCGCCGGGTTTGCTGTTTTTGGTATTCTTGGCTTCATGGCTCATGTTCTGCATACGACTGTAGGAAATGTAGTAGAATCAGGGCCTGGTCTAGTCTTCATCGTTTATCCAGAAGCCATTTCCCAGTTGCCATTGTCTGTGTTCTGGGCTCTGTTGTTCTTCTTCATGCTTGTCACTTTGGGCATCGACACCATGTTTGGTGCAATAGAAGCCTTTGTCACAGGAATAATCGATGAAAATCCAGGTTACCTTCGCAGACGAAAATGGATCGTCGTTTTGATCACAAGTATCGCCATGTTTATTGCTGGACTTCCTTGTGTTCTTCAGGGTGGTATGTATGTTTTCAATCTCTTCGATTACCAGGCTGCTGGCATATCCCTCCTGTTTTGTGTGTTGTTAGAAAACATCTTCATTGCCTGGATCTACGGTATTGATAGGTTCAGCAATGACGTGGAAATCATGACAGGGAGAAAGCCATATCTGTTTATTCGAATTTCACTCAAGTACATCTCGCCTGTTGTCAGCGCGGCTATCCTTTTGGCTAATTTCATCCAATGGAATGGAATCAAATACGATGGCGTACCCTATCCTGGCTGGGCTGAGTGGATTGGCTGGCTCATGTGTCTTTTAcccatcttcatcttcttcatcggGGCCTTTTACCAGCTGTGGAAAACACCAGGATCACTTAGGGAGCGTTGGCGAATTGTCACAACACCAGACGAGCACGCTTTGGCAGAGATTGAAAAACAGCAAGGAGTCATCCTCACCAGAAACCCTATCTACttATAGGATACTCCATTCGTCAGCATTTCACGAGCTTCCCGACCGGAAATCAAGATTTTACATTTAATATGTTATAGTTTACATGTAATTTGACCACAATCAAATTAGGTCGATAAATATAACTGATTAAATTTGTTAAAAACCAAAGATTTAAGTTCCCAGGAAGACATCATCCACCCAACAACTTTGACATTCATTTTGTACATGCTCGGACAAATGCCGGAGCCCTTGAGTTCAGAGTACAGAAGTTTAAAATAAAACTCATGAGCGCctaaaaagtaataataactAATTTTTCCCTGATTAAGCTTCAATATACACATTAATCGTTTGTTTATTTGGTATCTTTTACAAGAGGAATttgatattcttattttcaCAAATGCTAATAATCTGAGCTATATGCCGCTTATATTTGTGAGGATCATGCATAACATATCATATCAAGAAAGTAAAACCGTCAATACAACACTTTAGGAATACTAGGGAAAGGTGCAagggcaaataattgtttgaaAAACTACCTTCACGTCATTTCAAGCAAAAAACAATGGCCTAGAGCACATGGTCTTGAGCTACTTTGCACCATTTTCAAGtcttttcaaacctttttctCCAGTTTTGCACAAAAAGCAtaaactatagcccatggttttgaccgattttggcccattttcacaccttttataaaattatgcattattcatgacagatgtaaaataggtcatttttgtgcaaaaagcatgaactatagcccatggttttgaccgattatggcccattttcacaccttttataaaattatgcattattcatgacagatgtaaaataggtcatttttgcacaaaaagcatgaactatagcccatggttttgaccgattatggctcattttcacaccttttataaaattatgc

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31649	Sodium- and chloride-dependent GABA transporter 2 OS=Mus musculus OX=10090 GN=Slc6a13 PE=1 SV=1
P31646	Sodium- and chloride-dependent GABA transporter 2 OS=Rattus norvegicus OX=10116 GN=Slc6a13 PE=1 SV=1
P31647	Sodium- and chloride-dependent GABA transporter 3 OS=Rattus norvegicus OX=10116 GN=Slc6a11 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000251 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00209 all species →	SNF	Sodium:neurotransmitter symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000175 all species →	Family	Sodium:neurotransmitter symporter	Interproscan
IPR037272 all species →	Homologous_superfamily	Sodium:neurotransmitter symporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11616 all species →	SODIUM/CHLORIDE DEPENDENT TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0035725 all species →	Biological Process	sodium ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05038	SLC6A5_9, GLYT; solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.