Detailed information of ENSQPTP00000005654.1 in Actinia mediterranea

Genomic Location: chr11:2792304...2831305
NR annotation: XP_031554819.1, uncharacterized protein LOC116291753 isoform X1 [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P23468Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens OX=9606 GN=PTPRD PE=1 SV=2
Q64487Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus OX=10090 GN=Ptprd PE=1 SV=3
A4IFW2Receptor-type tyrosine-protein phosphatase F OS=Danio rerio OX=7955 GN=ptprf PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000060 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18861
all species →
PTP_tmTM proximal of protein tyrosine phosphatase, receptor type JFamilyInterproscan
PF00102
all species →
Y_phosphataseProtein-tyrosine phosphataseDomainInterproscan
PF00754
all species →
F5_F8_type_CF5/8 type C domainDomainInterproscan
PF00041
all species →
fn3Fibronectin type III domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR008979
all species →
Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR003961
all species →
DomainFibronectin type IIIInterproscan
IPR000421
all species →
DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR041201
all species →
DomainPTPRJ, transmembrane domainInterproscan
IPR007110
all species →
DomainImmunoglobulin-like domainInterproscan
IPR029021
all species →
Homologous_superfamilyProtein-tyrosine phosphatase-likeInterproscan
IPR016130
all species →
Active_siteProtein-tyrosine phosphatase, active siteInterproscan
IPR050713
all species →
FamilyReceptor-type Tyrosine-protein Phosphatases/UshersInterproscan
IPR036116
all species →
Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR000387
all species →
DomainTyrosine-specific protein phosphatases domainInterproscan
IPR000242
all species →
DomainTyrosine-specific protein phosphatase, PTPase domainInterproscan
IPR003595
all species →
DomainProtein-tyrosine phosphatase, catalyticInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46957
all species →
CYTOKINE RECEPTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0016311
all species →
Biological ProcessdephosphorylationInterproscan
GO:0043235
all species →
Cellular Componentreceptor complexInterproscan
GO:1990264
all species →
Biological Processpeptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activityInterproscan
GO:0004725
all species →
Molecular Functionprotein tyrosine phosphatase activityInterproscan
GO:0006470
all species →
Biological Processprotein dephosphorylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSQPTP00000005654.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP