Gene detail

Detailed information of ENSQPTP00000005935.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031556170.1, lysine-specific demethylase 4C-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000007170

ATGTCTTGTGATGGAAATAAGATCATGGTTTCCCGTCCGACACGCGCTGAATTCGCCAATTTTTCAGATTATATTCGTAAAATGGAGTCACAGGGCGCTCATCGAGCAGGAATAGCAAAGATTATTCCTCCAAAAGGATGGATCCCGAGGAGAAATTATAGTACCGTTGATGTCGAAATTCCTGCCCCTATTCATCAAGTCATTACAGGGACGCAAGGTCTATTTCAGCTCTTCAATgttcaaaagaaaaagctgTCTTACAAAGAATTCAAGAAATTGGCAAACAGTGAAAGGTATCGTCCACCAAAAGATGCAGACCACGATGAACTGGAGAGAAAATACTGGAAAAACCTGACATTCAATGCCCCAATCTATGCCGCTGATATATCAGGGTCAATCTTTGACAAAGATGTCAAAGAGTGGAATATCAGTAAACTGAACACAATCCTTGACCTCATTGAAGACAAATATGGTGTCAAAGTTGAGGGGGTCAACACACCATACCTGTACTTTGGTATGTGGAAGGCAACCTTTGCTTGGCATACAGAAGATATGGACTTGTACAGTATTAACTATGTACACTTTGGAGCTCCCAAGACTTGGTACGCCATTCCTCCTGAACATGGACAGCGCCTTGAACGTCTCGCAGCAGgttTTTTCCCCGGAAGTCGGCAAAGTTGTTCTAATTTCCTTCGCCACAAGATGACTATAATTTCACCTCAAGTTCTCAAGAAATTCTCCATTCCTTTTGATAAGGTAACACAAGAAGCAGGAGAGTTCATCGTGACATTTCCATACGGCTATCACTGTGGGTTTAATCACGGTTTTAATTGCGCAGAGTCTACAAACTTTGCTTCAGAGCGATGGATAGACTTCGGCAAGAAGGCTCACGTGtgcCAATGCAAAAAAGATTCAGTAAAAATTTGCATGGACGCATTTGTAGAGAAGTACCAGCCTGATCTATGGGAGGACTACCTTGCggcaaagaagaaggaagaggGTAGCGACAGCGAGAGTGAAAGCTCGAGTGAAGAGGAAGATAGTAAAGATGAAAGCGGTGAAGACGACGACGAAACAACCAGTAAAAGTCAAAAGAAACCTGTAGCTTCCCGTCGAAAAAGTCAGGATGTGGTATCCCCACGTCATTCCAAGCGCCAGCCTCCAGTGACCAAGTCTGTTACTCTACCGAGCTCACAGAGCAAGCTAGAAGAACTAAACAAAGACCCAGGTAAattctttgttttagttgtatccatattcatACTATGGAACCACCAGTCACCTTGCTTTAAAACAGAACAAGCTTTTAATATGATCATGGCTGAGTTAGAACCTTACTGTGCACTCTGTCAGTTATTCGCCAAATTGAAGGTAAACTATGATTCATCCCTTCAAAACTCGCCAAAATCCGAATCCCCGACCACCCGTAGTTGGCTGAAGCCTTCCAAACCTATCCTACCGGAGATTTGTTTCATGTCGGAGGGTTCAAGCCCGGAGAGTATGGGATCGTGGATTGATCACCGGATTTCTAACGATACTGAAAGTCCTTTACTGCGCTGTGAGACATGTAGAGTTGTCGTCCATGAAAGTTGCTATGGAACCGATAATCTGACCTCAGAAAAACCATGGAAGTGTGATAGATGTCGTCAAGACGACGAAGATGATATCAGATCTGCGGTACGTGTTTTACACCTACTGTCACACTTTGCGACGTGTTTATTATTGAGAGATATTATTGATTATCTATGTAGATGGGCTCATATTGGCTGTGCGCTGACCATTCCTGAAGTAGTATTTCAGGACATCGGTAATCGAAATGACATCAATACAGACAAGGTACCTCAAGGCAGGAAAAAACTGaaaTGTTCGATATGTCGTTCAGTAAGCTCAGATCTTCAAAGCGCATGCGTACAATGCTGTGCGGGTAAGTGCGCCACAGCATACCACGTGACGTGCTatgttttggcgggaaataaGCTCGAGCCTAGCGATTGGCCTCAACCTGTTGAAACATACTGCGAAAGACATAGTAGGAATAAATTTAAGTCAAAAGAACGAGATTTCTCTGAAATCAGTTGTGGAGAATCTGTCATAGCAAAACATAAAAATGGAAGATATTACAAGGGGAAAGTCATTAGCATGACATCAGAGGATTTCTACATGGTGTCGTTCGCTGATGGTTCTATTTGTGATACAGTTACCCCGAAAGATATCGAGGGATACGAGGACAGACAAGATGACATTCCCGAGGGCACCGTAATATCCATCAAATGGGAAGACGATACATTATGGAAGGCTAAAATAAATGGTAGACGAATAATTGTGACCTATCAGATAAAGTTCGAAGATGAATCTTTCTTGGGAGTGCGGCGAGAAGATGTGTATAAAGAAGGCGTAGAACTACCCGCTAAAGTGAGCCAGAGAATGTCCAACGCAACTGAAACAGCAAACCTATCGAGTTGGGATGACATGCCTAAGGAAGCGAAGCGAAGACGGAAGACAAACCCTCGTTATACGTCGTCCACATTCACCTAA

Transcript

ENSQPTT00000007170

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VCD7	Lysine-specific demethylase 4C OS=Mus musculus OX=10090 GN=Kdm4c PE=1 SV=1
Q9H3R0	Lysine-specific demethylase 4C OS=Homo sapiens OX=9606 GN=KDM4C PE=1 SV=2
O75164	Lysine-specific demethylase 4A OS=Homo sapiens OX=9606 GN=KDM4A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006820 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02375 all species →	JmjN	jmjN domain	Family	Interproscan
PF13832 all species →	zf-HC5HC2H_2	PHD-zinc-finger like domain	Domain	Interproscan
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF18104 all species →	Tudor_2	Jumonji domain-containing protein 2A Tudor domain	Domain	Interproscan
PF13831 all species →	PHD_2	PHD-finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003349 all species →	Domain	JmjN domain	Interproscan
IPR034732 all species →	Domain	Extended PHD (ePHD) domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR040477 all species →	Domain	Lysine-specific demethylase 4-like, Tudor domain	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10694 all species →	LYSINE-SPECIFIC DEMETHYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0032452 all species →	Molecular Function	histone demethylase activity	Interproscan
GO:0032454 all species →	Molecular Function	histone H3K9 demethylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000005935.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.