Gene detail

Detailed information of ENSQPTP00000005944.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031553912.1, WD repeat, SAM and U-box domain-containing protein 1-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000007180

TGCGTCATTTTATTTGtctgggatccctgtgtaaaGCCTGGCGCCTCTAGAAAAAACAcgttcaaaacaaaaagaaattttctCCCGATTACCAATTTCTCATTTATTCATCGCCGTAAATTTAGATGTAATTTAAAGTCTACGGCTATTTCAAAGTATCTGTGGCAAGGCAGTGGATTCTTAGTACATGGGTTGTAAATCGTCCAGTCTGAGAGAAGACAGTGATGAATGTTCACACTGGAGCCGTTCTTCTTTTCCTCGTCTTTCTCTTCGTACTCACCGTCCATTGACCGTTTTAAACCGTCATAATCAAGTCTACGACGTCGTAATTCAGCTCAAACACGAAGATAAAGATATCTATGCCTGTTGTTTTCCCAGTGACGACGATGGGGTTTTACTCTCAGCGTCAAAGGTCGAACAAACGACTTTTTTAAGACACACTCGAGATTTCTCATCCATAAGATTATGGGATTTGAACAGGCGACAGATAAACACGGGCTTTTTAGCTGATTTTCCCCGTTCTTGTCGCTCGTGTGATTTCTCCCCAGACGGTCAGTTAGTAGTATGTGTATTCAGCGAGGATTCTTTGGCTTTAGTTCGTATGAGGTCGTGGAAAACAACCAGTGCAGAAGTTATTCAGATGAGGAAAATATGGCGCACTAGAGGGACACTTCTCTGCTGTACTTTTTCTCCTGAAGGCAGATCAATAGTCGTTGTTTCGCGACTAACAGGAGAGACGAATCATGTCTGTATGATCGATGtgaattctaaaaaaataacaaaaaagatGAGTCCAACTTTATCGTCCAAAATACGCGGTTTTGTAAAGTCATGTATGTTCTCTCCAGATGGATTATTTCTATCTGTTTCTACGTCCAGTGGACAGCTGATTTTATTTGACATACAAGATTTACATATTCAAGGGAGTCTTGATTTGGACACAGAAGCTAGTACCTCTTGTCTTTGCGATCCTTTTCACCAATCCTCTAGGCGTTCAATAACCTTATCAATGCAATGTTGGTATCTATTTGACCCTCGATATGGCCATAAGTACATTGCTTCATGTATTGAGGATGGTACTATACAAACATGGTCTCTCAATTCTAATGATCAAGGGCTTACAAGAATTCAAAGCATTAATATATTACAGACCCCATGGCAGAAGATTTGCTCTGCCGCATTCTCCCCTGATGGCAACATTCTAGCAGTTGGTACATCAGATTCTAAGATTTTAGCACTCAACTCTGAAAGCCTTGATCTCCTATTCACACTTAACGCTCATTTACAGCCTGATGGCCTTCGCACATGGTATCAAAATACTGAAGTATCATGTTTAGCATTCACACGGACATGTCAGCAACTTGCTGCTGGCTACAATGATGGCCGTATCAGAATTTGGCAGCTTCCGCCTCTCATAAGTCTTCAACACATGTGTAGACTTGTCATCATAAAATTCATTCCTGcaaacaaaataccaaaacttCCACTTCCAGCACACTTGTTGAGATATCTTCTATATTCTCCACTAAAACACCTCTGAAACTTAAGTTGGATGTGAATTCTTTAGAAGCTGATTACAACTTTATCTAGAATATCAGATCAATGATGGTCACGTTGTTGTGTATAAATTAATCAACGTACAAAATGCTTCCTGATATTTAACTATTTTACCAGGCTTTCCATTGGAGTGCTCGACGAGAGTCCATTTAGCCTACTTGgccatatatattaatatttagctTCACAGGAATGCCAATTAATTAAAAGATAGAGAAAAGTTATCAATATAAATCAATTATTTAACTGCATTCATTGTAATATTTACTGATATTAGGTGAATGTGAATTTGACTGCATCAAATGTACATTCAAGAATATAATTTTATTGGTTCATATTATAGATCTTTTCTTCAAGTTCCAGTTTTTGCACTCATCAAAGGAAATGACATTACAGAACATACCTGTACACAAGAATTTCAGTTTAAAAAAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001705 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07525 all species →	SOCS_box	SOCS box	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001496 all species →	Domain	SOCS box domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036036 all species →	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan
IPR051983 all species →	Family	WD repeat and SOCS box domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15622 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10342	WSB2; WD repeat and SOCS box-containing protein 2	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.