Gene detail

Detailed information of ENSQPTP00000008013.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031562864.1, UV excision repair protein RAD23 homolog B-like isoform X1 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000009974

TGACGTCTGATCTCAGTATTTTGTAATGGCGCACGTTTGAAGTCGGttctttatcaaaaaatacaaagaaatctTCCATTTAAAGACGGTTTAACACGCTAGAACTGGACATATAGTGGTGCTGAATATATACTTGAAGAATCAAAATGTTAATTACGTTCAAAACACTGCAGCAACAGACGTTTAAGCTGGAATTCGACGAAAATCAGTTGGTTCTGGAGCTGAAGAAAAAGATTGAGAGTGAAAAGGGAAAGGATGGGTACCCACATAATGCCATTAAACTGATATATGCAGGAAAAATACTGAATGATGAAACACCAGTTAAGGATTACAAGATAGATGAAAAAAGTTTTGTTGTTATCATGGTTTCAAAGCCCAAACCAGCAGCCACACCTGCACCATCTACAACAGCACAACCTACCACAACGCCACAGGCTACTGCTGCAGCTGCTACTCCAACAACACAAGCTTCTTCCAGACCTGAACAGCCTGAGCCAAAGCCAGTAGAGACAAAGCCAGTAGAGACAAATAAAGAAGCTGAGACTAAACCACCTAGTACTGAAACCCCTACTGCACCCACTCAAGAGACGAGCACAGCATCACCATCAGATCCTTTGATGGCAGCTGAATCAGTATTAGCCACTGGAAGTGAATATGAAAACTTAGTCTCTGAAATCATGTCAATGGGCTTCGAACGAGATTTGgtTGTAAGAGCTTTAAGAGCAAGTTTTAATAATCCAGACAGAGCTGTGGAATACTTAATGACGGAAATCCCAGAAATTCCAGATCTGCAGGGAGAATCAGGGGAGGATCAGCCATCAGCGCCGGCAGCAAGAGGACAAGAAGCACAGGAAGGGAATGGATCTTTGGATTTCTTACGGAATCAGCCTCAGTTTATTCAAATGCGACAAATGGTTCAACAAAACCCTTCTTCGCTTCCCACGCTACTACAGCAAATGGGTCAGTCCAATCCACAACTACTACAGCTTATTAGTCAACGGCAGGAGGAATTTATTCAAATGCTAAACGAGCCAGTCCCAGAAGATGCGTCCTCTGCACAACCAGCAGCAGCACAAGGTCGACAGCAAGGTACACCTGGCCAAGTTGCTCCATCTGCTGAAGGGGATCAAGCAGCTCCACCTCCTGGTGTTAGCTATATTCACATAACACAAACAGAGAAGGAAGCTATAGAAAGGCTAAAGGCTCTTGGATTCAATGAAAACATGGCTGTCCAAGCTTACTTTGCTTgtgacaaaaatgaaaatttagcTGCAAACTTCCTCTTAAGTCAAGGATTTGATGATGACTAGATCACTCAATTAGATAAGCCTAGGGGTTCTCTATGCATAAACCCACAACAAAAGCCCGTTTAAAAGCATATTTGACCAGTAAGAAATCCTCTCATATCCATTCCCCAACCATGAGGAAGGTTATTTCCACTTTTAATTGCTGATGAGGATCTAAGTAACGGAGTCATTGCATTTAATTTTTCAGCTCCTTTGACTCTAACCATTACCCACCCATCGGGAAAATTTTCTCCGCTTAATATTGCTGACAGCGGACTGAGTATAAAATTTGGTGCCATTGCATTTAATTTTTCAGCTCCACTGACTCGTCTAATAACCATTCCCCACACATCAGGAAAATTTTCTCCACTTAATATTGCTGACAGGGGTCTGAGTATGAGATTTGGTGCTATTGCAATTTTTCAGCTGCTTCCCCTGCCTTAGGAAATCATTatgggagggggaggggtaaggATTTGAAATCTTAAACTATGGGGAACTTCGTAAATAAGACCCAGGGGTGTCAAAAGCCTTAAAACAAGCTGACCAAGTACTGAAAGATTAAATGCATTGCTCCAATACTTGGTGGGTGTATGCTTTGATAGTGATCTTTCAGTCTACAAATTCTAAACTGCAAATAGTCTCACTTATCACTCCAAAATCAGTAAAGATGAGTTTTCAGAATACCAAGTTTTAGAGTTGCTGAGGATTCTCGGAAAGACGCGCGTCCAAAGGAATCGTAAAACTCGATATTCTAAAAACTCGTCTTTTCTGAGTGTGGGGTAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3KMV2	UV excision repair protein RAD23 homolog A OS=Bos taurus OX=9913 GN=RAD23A PE=2 SV=1
P54725	UV excision repair protein RAD23 homolog A OS=Homo sapiens OX=9606 GN=RAD23A PE=1 SV=1
P54726	UV excision repair protein RAD23 homolog A OS=Mus musculus OX=10090 GN=Rad23a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006845 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	UBD\|Alpha-Helix\|UBA · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00627 all species →	UBA	UBA/TS-N domain	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF09280 all species →	XPC-binding	XPC-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036353 all species →	Homologous_superfamily	XPC-binding domain superfamily	Interproscan
IPR004806 all species →	Family	UV excision repair protein Rad23	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR006636 all species →	Domain	Heat shock chaperonin-binding	Interproscan
IPR041811 all species →	Domain	RAD23A/RAD23B, UBA1 domain	Interproscan
IPR015360 all species →	Domain	XPC-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10621 all species →	UV EXCISION REPAIR PROTEIN RAD23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0031593 all species →	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0070628 all species →	Molecular Function	proteasome binding	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10839	RAD23, HR23; UV excision repair protein RAD23	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.