Gene detail

Detailed information of ENSQPTP00000009056.1 in Actinia mediterranea

Genomic Location: chr13:4773975...4777163
NR annotation: XP_031568275.1, uncharacterized protein LOC116302979, partial [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSQPTT00000011275

atgattgctacccagagttcctttcggtccagtcgcgtaggcttgagttggtcgacgacaacgttttttgaattgactgtattacGCGAGGGTGTTAAACGAAACATCTTTTTGAAATTTCGTCATCAGCGCAGCATGTTTTTGAACTGTGGTCGAAACGTGTTGCGTTTAGACGATATCAAAATGCTCCTTCAAGAACACAAGTACGACATTCTGGCAATCACCGAGACATGTCTTGACAGTTCTGTACTAAACAAACAGCTTGCCATTGACAACTACAGACTACTGCGGCGAGATAGACATGGAGGATCAGGCGGTGGATGTGCATTTTATGTTGCAAACCACTTATCTGTACAGCATCAAAAATGCTTTGACTACAGTAACATCGAAGCAATTTGGATTAAAGTAAGGGCTGGTGCGTCAATGGTGCTTATGGGAGTTGTGTATAGACCACCAAGTGATAACGAATTTTTCTCCAACTTCGCCCAACCTCTGGAGAGGATCTGgctaaaacaacaaaacatagTCATACTTGGCGATCTGAACTGCGACTTAtacaacaagaaaagaaaaagaaaaactgcaGGACATCTTGGAAATAAACTATCAAATCTTCTGAATCAGTTCGGCATGCAAGTCTGCAACGACACGCCAACAAGAGTCACCCTCAATACTGCAACACTGATTGATCTAGTGATATCCAATAAAGTTGGTCTGGTCAAATCCACTGGAACTAGAGAACTTGGTATTTCAGATCACAAGCTTGTTTACGCCAGCCTCGATGCCAAGATAAGACGCCCGCCTCCCAAGATCATCAGGGCGCGTAACTATAAGAACTTCAACCAGACAGACTTCCAAAAAGATTTAGAAGTTGCACCATGGTCTGTTTGCCACGCGTTTGATGATCTTGACGACACATATTGGGCCTGGACAAAATTATTTGGAGACATCTGTGAAAAACATGCAACTTTCAGAAGCTTTAAAGTGCGTAGCCAGTCACTGCCATGGATAACACCTATGATCAGACACAAAATGAATCAAAGATACAAGACCTACCATCAAGCCATCAAGTTCAATGACCCCATCTTATGGAAAAAGTACCGAGAAATGAGGAACCAATTGACGACAGAGGTTAGGAAAGCAAAAGCTGAATACTACAAACAACTGTTTGATAAAAGTACATCTCCTATTAACGTTATCAGACGTGAAGACAACACCACAGCTACAGAAAACCAGGAAAAAGCTGAAATTCTGAACCAACACTTCTCGACAGTAGGAGAATTATTGGCCTCTGAGTTACCACCAAAACAACCGGAAGTAGATCATGTAGCCACATATACTAGCCAAACTCAACCACTGTTCCTGCCCACCATTAATGTGACTTGTGAGATCATCCGTCAACAAGTCTCTAAACTCAAATCATCTAAATCCATGGGTTTAGACAACGTGTTTCCCAAATTACTAAAACTCGCAGACAACGCTATAGCACCATCTTTGACTGACATCTGCTACAAATCTGCAAGCACCAAATTAATACCAAATGCATggaaaattgcaaaaatttGTCCAATCTTCAAGAAGGATAACGAACAAGACAAATCTAACTACCGACCCATCTCACTTCTCTGTGTGCCAAGCAAAATAATGGAGACTACTGTCGCTGATTGCCTTACTTTACACATGTCATCCAACAACCTGTTCAGCCATTTCCAGTGGGCTTACAAACCTGGTCTCTCAAGTGAACTACTCCTTGCCAACATGATAGAACAGTGGAGGTCGGCCCTTGACTCCAACTATGTTGTTTGTGCTGTCTTTTTTGATTTCAAGAAAGCTTTCGACTCTATAGACCACAGCGTTCTCTTGAACAAGATCACCATGCTCGGTGTGGCTGATGACGTACGATTGTGGTTAAAGAACTACCTCTCAGATCGCGCTCATACAACGGTTGTCAACGGTGTATCATCGAGTATTCAACGTGTTAGATATGGCGTCCCGCAAGGATCTGTCTTAGGACCAGTCCTTTTTTCTATCTTCTGCAATGACCTGCCAGATATTGCAACTGGTGAGGATAAGTTATACATGTACGCTGATGATACTACGATATTCACCATTGGCGAAACAACCGATATTGCAGTCAACAGAATAAATGCTGTACTACATCGAATGTACGCTTGGTGCAACACAAACCGGATGACTGCTCACCCTGGCAAGTGCGAGTACATGATTCTGCGACGTTCTCCATTCATTGGTCCCTTATCAGACGTCACATTTGGTAAAGCATCGCTGAAGAAAGTCCAACACACCAGATGTCTAGGCCTAGAACTAGAAGACAAGCTGTCTTGGTCTTACCATGTAACAGAACTCACTAAATCTTTTGTGCAAAAACTAAATCTACTCAAATCGCTCTACTTCCTTCCCAAACTTGTAAAACAAGACTTCTACTACAAGATCATTCTTCCAGCCGTCACCTAG

Transcript

ENSQPTT00000011275

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
P21329	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila funebris OX=7221 GN=jockeypol PE=1 SV=1
P21328	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster OX=7227 GN=pol PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000151 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33395 all species →	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0007508 all species →	Biological Process	larval heart development	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0061343 all species →	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000009056.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →