Gene detail

Detailed information of ENSQPTP00000009239.1 in Actinia mediterranea

Genomic Location: chr11:4292318...4298219
NR annotation: XP_020627207.1, uncharacterized protein LOC110064491, partial [Orbicella faveolata]
Species Actinia mediterranea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSQPTT00000011505

ACCTCAAAGTCCCTGCCAAATGAAGACTCATCGTGCGAACGAACAACCTACGGAGAATCCACAGTTTATGGGGAAATAGCAGATACCAAAGTAAGGATATTGATAGACTCTGGTGCCGCCATATCGGCAGTTAGTGAAAAACTGTTCGAAGAAATACCGCTTCTCCGAAGCAGCGAACTAAACCAAATTCACAATGTACAAGTCCAGTCCGTGAACGGTCAACCACTCAAGATACTTGGACAGATTACCGTTGAAGTAGGAATCGGAGGGCAAAGCTACGAGTTACAAGCCCACATTATCAAGGACTTACACTACAATGTTGTACTTGGCCGAGATTTCTTAAAGGAACACGAAGCCCAAATTGACTTTGCAAAAGAAACAGTACGATTGGCAAGGTTGACTGAGCAAAGCAGCACTTTCCCAAAGAATACCGCCAGAACAGACCCGCAGCTTGGCCCATCCACAGTCGTTGCTGCTGCAACTTACGTAGTTCCACCGCTTACAGAGACCGTCTTCCCTGTAAGGATTACTGGAGACCTAGCAGTCGGAGTTCAAGGCTATGTTGACCCTGACGAGAGACTGGTATCCCGCTTTCAAGTCTTTGGAACCACAGTCCTCGCGAATGTCAGCCAAGAGAAAACAGTTCCATTTCGAGTCATAAACCCGACAGATACACCAGTAACGATCTATCGCAACACCAACTTGGGGTCCTTTTACCCAAGCCTTGGCGTCATGGCTGCGGTCGAGCTGGATGAGCCTAACAACCCTGTGAGTTCTACACCTGAAAATCTAAGTGAATCTAAAGACACAACCGAACAAGTCCCTATACAATGGGACGACGCAAGCATGACGACGGAACAACAGTCTGCACTTCGAAGACTCGTTAATGAACATAGAGATGTATTTGCATTGAAACCGGACGAGCTTGGCTGTACATCATTGGTGGAACATCATATAGACACTGGGAATACCCCACCAATCCGGCGCCCTCCTTACAGAACGTTGCCAGAGCAGAGACAGCGGATCGACACGCACGTACAAGAAATGCTGGAAAGAGGAATAATTGAACCATCAAGTTCCCGCGATGGCACCGACCGGTTCTGCGTGGACTACAGAAAGTTAAATGCTGTAACTCGTAAGGACAGCTATCCTCTTCCAAGAACTGATGACGTCCTAGATGCCCTGCACGAAACACAGTACTTCAGCTCTTTGGACCTGATGGCGGGCTACTGGCAAGTGAAGATGGACGAAAACTCACGAGATAAAACTGCTTTTGTCACTCACTTTGGACTATTTCACTTTTTAAAGATGCCATTTGGGCTCTGTAATTCGCCTAGTACCTTCCAGAGACTCATGGAATGTATGCTGAGGGGACTAACCTGGAAGATCTGCCTGCTGTACTTGGAcgacatcatcatcttcagtaAAACCTTTCAAGAACATCTGGAACACCTGAAGCTAGTATTTGGACGACTACGAGCGGCTAATGTAAAGTTGAAGCCATCAAAGTGTTACTTCGCCAGTCACAAAGTCGAATTTCTGGGCCATGTAGTAAGCAGGGAAGGAGTCCAACCTAATGAAGACAAGATCAACGCAGTCAAGAATTACCCAAGACCACGAAACGTCACTGATGTCCGAGCATTCTTAGGACTGTGCAACTACTACCGTCGATTTGTCCAAGGGTTCGCCAAGATGGCAGCGCCGCTTAACCAATTAACACGGAAGGCTGCACGTTTCCTATGGAGCGAAGATCACCAAATCGCCTTCGACAAGCTGAAAACTGCACTGACAACTACCCCCATTTTGGCGTTTCTTGACTTCAGAGAAGAATTTCATCTATTCGTAGACGCCAGTCAAGATGCTATTGGAATCACACTAGGCCAAATTCAACATGGTAAAGAACGAGTAATTGCATATGGAGGACGTAATTTATCAGAGACTGAACGCAAGTACAGCACTACAGAAAGAGAAGCACTCGCAGTCGTCTTCGGCATCAAGAAATGCAGACCATACCTATACGGACGAAAGTTCACAGTCCACACCGACCATCACTCACTTCGCTGGCTGATGAATACCAGACACGAGACTGGCCGATTGGCTCGCTGGGCGCTCACACTACAAGAATACgattttgaaattattcaCAGACCCGGTTCTTCCAATGGAAATGCAGACGCCTTATCCCGACGGCAGTACCACGACAATATTGCAGGAATTGTCTCGCAAGAACCAACACTACCGCTGACCAGAACCCTAGAGCAAGTTAAACAGTTGCAGAGGAGGGATCCTGACCTAGGCGACCTTATTACGTACATTGAAACAGACAAGCTTCCAAAGGAGACGCGCGTTTACAAGAAGTCAccgcttgcagaactaatgcgcgagaattctatttggttaatggatgcgAAGGGGTGTcaatttatgacgcaagatggtactttataccgaccggaaatggaacacctgcgcatacaaagtgcatgtgaatcccttggtgaggacttctcagacgaggtcctcagctctcgtagtttggacttcttggcggccaagaagaggaatgggtggaaatccacgccggaggagttcaaagatatagctaaagcttgcgtagaacacggtcacggtggtctgtggaacatggagtacgacgaagacgagtacgtgtctctggatatgaaacattgttaccccgcaagttttaaaggcctaggagattgtaaggaatattacgaccgttacggacatccagattcacagttctttcgtgttgcgttggatggtcactacgacgccccagcaacggggttcgtacggttaaccagctggaaatttacaaaagacttacatccaataatctatgcgtggtacgggaagcacctgcaggagaaagaatggatacccatacccctattgaagttctttgaagagcgcaaacttttaaaatacacagcgcatgaagccatactttgtcacagcgcctttacgcaatggttgccggagcataaccccacggcgcgtgtggtcataggtaaattcacgcagggcgctaaggagggcgagaaacacatgcagcgacgcctgataacagacgaaggcgaactaagtttcctcatcaagcgtgcacatgatgaaggaacaatggtgtctgtagagaaatgggattacctcgtagatgataaactacacaaatggaatgctttgtgttactaccaagaccatcgaccgcagtattatcatctgcgtgccagcatgttagcctatgcgcacattaacctacttgcgatgttactgcggtttgacaaagaggacatcccgcgcgtagccacggattccttgtacgtaaagcctgaagtgttagagaagatgaaggaattctacaccgaagatgagttggcggaaagtggtcaatggcgcgttaaagatgaggagataaaagcctggagagCACGCGTGGAATATCGCGGCgaaaatacttggggcgtcgtaatgcccacgatgaggcccatgccaaccgtaaaggaccccatttcttaccaacgcttctcttacctttacggtacgggaggcagcggtaagacgacgcgtgtgttagaactctttcctaagataaaggtgctaacgtcaacgcatcgtttggaaagggaACTCTGCGGTAtaggccacgacgcgcagacctaccatagcttcttccgttggaatggccaaaagtgggtacctgaagccatccacgacatacctccggtgatactttgggacgaAATCTgtaccgttcctttagaaatcctgcaggagttcgtagacttcctccgtggaaagtgtcaagtaatattcgccggatatccctgccagccttctccaatagccggagagatgtcccacgaatggctgaaagatttcgtagaccatgcggaggaaattaacacagactaccgcagcaaggatcaaataagaaacctgaaagcggaattaaggggcctcggtgacgccgagcaatgcaagacgctgcgcaaacgcatacgagcgaagtcctacgaggactttctatacgcctggcaccctaaggatctggtgctgagcagcaaacgcgcagcacagcctcgcatacaaaaggatttgctaaatatacaccgagagcgcttccctacgcatctcgtacctgtttgttataaaccccacgacacccgcatgcaaaaaagagacgtctgggtaccagGCACGAATGTTCAACTGCAAAATGCGGTTacccacgataaagcctgggtgcccatgGAAAAGGTCgaaagaattacctcccatccagactag

Transcript

ENSQPTT00000011505

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13975 all species →	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR051320 all species →	Family	Viral Replication and Maturation Polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33064 all species →	POL PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for ENSQPTP00000009239.1 in Actinia mediterranea.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000009239.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.