Detailed information of ENSQPTP00000009516.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031569662.1, LIM homeobox transcription factor 1-beta-like isoform X6 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

 Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8UVR3LIM homeobox transcription factor 1-beta.1 OS=Xenopus laevis OX=8355 GN=lmx1b.1 PE=2 SV=1
P53413LIM/homeobox protein LMX-1.2 OS=Gallus gallus OX=9031 GN=LMX1B PE=2 SV=2
Q60564LIM homeobox transcription factor 1-beta (Fragment) OS=Mesocricetus auratus OX=10036 GN=LMX1B PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002313 (this species only)
Transcription factor familyHomeobox · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan
PF00412
all species →		LIMLIM domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001781
all species →		DomainZinc finger, LIM-typeInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR050453
all species →		FamilyLIM/homeobox transcription factorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24208
all species →		LIM/HOMEOBOX PROTEIN LHXInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000977
all species →		Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030182
all species →		Biological Processneuron differentiationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSQPTP00000009516.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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