Gene detail

Detailed information of ENSQPTP00000009719.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031553869.1, splicing factor 3B subunit 4-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000012076

GTTAATGTCATAAATTCAGCATGGCGGCCGGTCCGATAGCAGAAAGAAATCAAGATGCGACTATCTATGTCGGAGGTTTGGATGAGAAAGTATCAGAAACTTTGTTATGGGAGTGCTTTCTACAAGCTGGACCAGTTGTCAATGTACACATGCCAAAAGACAGGATAACACAACAGCATCAAGGTTACGGGTTTGTCGAGTTCTTAGGTGAAGAAGATGCGGATTATGCCATTAAAGTAATGAACATGATAAAGATGTTTGGCAAGCCAATTAGAGTTAATAAGGCCTCAGCTCACAATAAAAACTTGGATGTTGGTGCTAATTTATTTATTGGGAATCTTGACCCAGAGGTTGATGAGAAACTTCTGTATGATACGTTCAGTGCTTTTGGGGTAATTCTTCAAACTCCTAAGATCATGAGAGATCCTGACACTGGTAACTCTAAAGGCTTTGCTTTTATCAACTTTGCAAGCTTTGAAGCTGCAGATGCCGCAATAGAAGCCATGAACGGACAATATTTATGTAATCGACCAATCACTGTATCATTTGCATTTAAAAAAGACTCCAAAGGAGAAAGGCATGGCTCTGCTGCAGAGCGTTTACTTGCTGCTCAGAACCCACTTACACAAGCTGATCGCCCACATCAACTCTTTGCTGATGCCCCACCGACAACTGTGCCAAATGTTCCACCCATGTCAGTTGCGACCATGCCTCCTATGGGTATGGGTATGCCGATGGGTATGCCTGGTCCTCCACCCATGGGAATGCCTCCAGTCCCATCATCGATGCCACCACCAGGCATGCCTCCCCCTGGAATGATGCCGCCACCTGGCTTCCCAGGGTTCCACATGCAACCAGGCATGATGCCAGCACATGGGATGCCTCAGTTTGACCCAATGCAGCACCAGCATATGCAGCACCAGCCACCACCTCCTCCGTCAAATATGCAGGGGGGTATGCCAATGCATATGCAAATGATGGGACAGCCCCCTCCGCCTCCGCCAGACATGAACCATCCACATGGTATGCAGTTTATACCAATGCCGCCACCAATGGGACAAAACATACATCAACCGCCACCCCCACCACAACAGGCATAGTCTATGAAATATGCCATATTTCTGGTAGGAAACCATGCTCTGCTCTAAGAGCAGATATCTCATGTGACAGTGAAACATATATTGTACAGACCTATATCACCTTGAATATGATCATCGTACTTTGTCCGAGCACTCATATTGGATAAAGATTGGGACACACTAAATGACAATTCATGCACTGAAACAAAATATGGTCCCCGATTCGAATAAATTATTGTTCTGCTAGaactcttttctttttttaagtgAACACAAtgctagtcagtccagaacaatagttttttcaaaatttactcCATATTTTGATTTGGTGTATAGGGATGAAGTAAGATTAGGTAGCAGAAAAATTTTTTCTCTTCATTcgacatttttatttatatttaaggaTACATTCTTGTTGCTTTGATATTTTACCCTGCGACAGTTGCAAGAAACCAAACTATGATTCCTTGTGTCAGGCAACAGGGACAAAATAAGTCCAATTTCCATATTAATATTGTGTGTAGGTACTTACTTACTAAATTGACCTGTTGCTGTGGCAACATAAAAATGAACCAATGAGCTCTTAGTTCCCAGGATTACTCATAATGGAATATAAGATTCCTGGCGTTAAAGTTACTTCTTGTGCACCGCCATGCTAGTGACTTTTTCTTGCAATTTGCACACTTGGTGCGAAATTACCACAGTGAGCCGTCCCTGTGACTTGTCATCTAGTGTGCCCCAACCTCAATGGTTTTGTTCAATGTGATTGGTTCCTTGTGCCGTGCCGTTTCACAGTTACATGATAATCTCCTCTACCAAAGCAGTGAAGACAACAACTGCCGTCATCATGTAAAAAGATCATGTACATCTTGAATAGATGTGTTAAACAAGGGCAAAGATTGTGAGAGATTTTAAGGGTAACTTGTACATAGAAGTCCCAGCCGAAGGTGACGAACACTtcaaatacatatttttaagcA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15427	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1
Q8QZY9	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1
Q6AYL5	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007077 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052084 all species →	Family	Spliceosome-associated SF3B4 subunit	Interproscan
IPR034159 all species →	Domain	SF3B4, RNA recognition motif 2	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034158 all species →	Domain	SF3B4, RNA recognition motif 1	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48030 all species →	SPLICING FACTOR 3B SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0005689 all species →	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0048026 all species →	Biological Process	positive regulation of mRNA splicing, via spliceosome	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12831	SF3B4, SAP49; splicing factor 3B subunit 4	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.