Gene detail

Detailed information of ENSQPTP00000012678.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031552127.1, basement membrane-specific heparan sulfate proteoglycan core protein-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000015600

CCGCTTTTACGAtaccaaaataaaatgatacaaaataaatattcaatatATGAAGTCAAGCGTCATCAAGGACATTGGCAAGGCTACTGCAATCCATCTCGAAAGAAGACTGAATATGACCCCTTtgacacggtcacggcacagTATGTACTGTGCAGATCGTTATACATGTATGGTCATGTGGTGTGCAGTGATATCTCTCAGATCATCTCTTACTTGACAATAACATTTGATCTGATCTCTGTTGGAAAGTTATTCAGCTAGTTCCGTCAATTCCAGTCATGTCTGACAAAACAAGCTGCTCAATTCGGACAAGCAGAGTGTCTGTAGTCTTGTGGTTTGTAGTTGGTGTGTTGTGTTTGGGTGAGTTTGTACGTGTTGAGTTGATTCTAAGTGAATACAGGACAAGACTACACAAGGTAGAAGAGAAGACAGATGGGAAAGATGTAGAGCCGTGTGATGTGAAAACCAAGCAAATCAAAGCAAGTCGTTCCATCGACTCACCAAAGATCATCTATGATTCAAGACAAAGAGCACGTCGCCTCACCGTGTCTTCACCTTCAAACGACACCAACTTTCAAACTGTTCGTAAAGAACTTTTACAAACAATAGGAGTGGAGGTGAATAAAGCCTTTTCTAAAGCGTGTGGCGCAAACAAGAATAGATGTCCACCAGGACCTCCCGGTCCACCTGGACGACCAGGTCGCAAAGGATCGACCGGAAGACGAGGACAACCAGGAAGAAGAGGCAAACGAGGACCCCAAGGACCCATGGGAGTGGTAGGCAGAAGTGGCAAGCAAGGCATGATGGGACCTACTGGGTTGAAGGGAGAGAAGGGAGACAGAGGTGATCGTGGACCACGTGGTGTAGCTGGACGAGATGGTAGACCTGGTCAATCGATATCTTCACCAAAGGTTCAAGTATCCCCTCCCTTGTTAATTGTTAATGAAAGCGATACAGCCGTGTTGCATTGTGGGTGGAGTGGAAATCCAGTACCTGTGATTGGCTGGAGGAGAGTTGGTGGTTTACTAGACAAGACAAGAAGTGTGTTGGATGCAGGTCTGGCAGGTGTTGATAGGAGTCATAATCTGGAGATAAGGAATGTTAGTAGTAACGATTCAGGAGTGTACGAGTGTAAAGGCAGTAATATACTTGGACAAGCAAACCAGACAGCTACACTTCTCGTCAACTATCGTCCCcgaatttctttttcatatGGACCTTACTATGCTGCACAAGGAAACAACTTTACCCTTCCACAATGTCACGTGACTGGTCATCCTACTCCATCGGTCACGTGGTTCAAAGCCTTTGGTAGTTTGCCTGCAGTTCGTACAGTCTCTAATACAAGTCACCTCAGTTTGTTCTCGCTGTCTAAACAAGACTCAGGGTTATACATCTGTAAAGCTTCTAATTTTCTTGGTTCAACTGTTGGACAAACACAACTTGTTGTTGTCATGTTACCAAGATTCACCATCTTCCCTTCCCCCACCGAATCTTTTGCACTTTTTGAAAGTATGAGACTGGACTGTCAAGCCACAGCAGATCCTCCTGCTAGGATTTCTTGGAGTAAAGACAACCAACAATTGTCATCTGATGATAGAACACGGGTCCATGTGAATGGAAGTCTGACCATAACAAGATTGAAGACTGCTGACTCAGGGACTTACGTCTGTCAAGCTGTCAGCGCTGGGGTTGCCATGGCAAGAACCGAAACCAATGTAACTGTAGCAGCACACCGGTTCGTTCTCAAATTAACAAGAGATCTAGATCTATCTTGGCTGATTACGTCACCATTAGAGGAGAAATTCCAACCATGACAGCTGTGACGTTCTGCTACTGGATGAAGACCGCTGACACAAGAAACCACGGCACAGTTGTTAGTTATGCAGCGAATGGAATGGCAAACCAATTCGTTTtgataaattacaaaaattggatattttatataaatgtCAATAGTAAAAGGCAAAATGATTGATCTTTATGATTTAATACTGACCGGACCGTAAGGAGTGTGGATTTGATAAATTGAAGAGTTAAAAACGTTTAGTCAAAATTCTTCGAGGTTTGGCCAAGGAATAGATGAACGAAATAGACTGTattaaaaagttgaaaagcCACTTTTAAGTAACAAAAAAGCCTAGCCATAATGCATTCAAAATTGTTGTAAAAGATTAAAAACGCGGGAGAAAAGGTATCTAAAAATGTCGTTAAAGATGTTGATaaagtgcacgcactaaaaccgtgaacattaaatagtattaattagtactatttcatacagaatcctttgttttctattgtttaattatcactatttagtgctaaaaattagcatttgtttcacggatttagtgtgagcactctaatcAAAATATCAGAGCAACATGCAATATCAGAGCGAGATTGCATATTTCGCATGTCGAACAATTCATTTGTAAATTTCACATACTAAGAAATTTGGCAAAGTTTGCAATAACTTTTGGGCAAAATGTATATTCATTTCTTgttattttacttttcaatATATACGAATATTATATGAATTTTGCAGCTTTCGCAGGTTGAGGGTCCATGCGTTCAGACATGAATTAGAATTATAGTGTAGAAAGTTAcgataaaaaaattacatgCTTATGTACAACTACTAGGCCAGGAAAAGCCGTTAGCAAGCATTTGGTATATGTGTAATCAATTGCTTGACCATGGGGACTTCTAACACTTTAAATCCCCATCCCTTGCCCTCACTCCCATCCTACCCTACCCTCCCCCAAGGTTAACTTTGATAAGTGTATTACTATACCCTAAGGTGTATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
Q05793	Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000013 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013106 all species →	Domain	Immunoglobulin V-set domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR051275 all species →	Family	Cellular adhesion and signaling domain-containing protein	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11640 all species →	NEPHRIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000012678.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.