Gene detail

Detailed information of ENSQPTP00000013648.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031553428.1, E3 ubiquitin-protein ligase MARCH11-like isoform X3 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000016818

GCAAGAGGCGTTCAAACTGTGGTGTCGTCGAAGTAGTATTACGTAACATTTGGTGCCTAACgcttttagctttttttaacaccttaaAAGACTCTGCCTAGGGCAAGTGTAGGCATGCATGTGTATGTAGTATTTTACAGTCTTGTCTTGAGTACAGCCAAAACCACAGCTTTCGTCCGTGGGGTAGACTCTCTTCACTGACTGCACAGACAAGCAAAAGCCTTTGAACACAAAATCTTTCCAACCAAGGTTACTCGAGAAGGCAATCTGGTTCGACAGTCTTGGAATTACAAGGGCTGATGGCTAGTGAAGACGACAACACGGAGTGTGATGCTGTTATGGAAAAGAAGCAAGAAAGCAAAAACGTTTACGCAGAAGATGGAAAACTCACAATTAATATTGATTCTGACAGCGAATGTGAGCCTCTAGTAGATGAAATAGCGGCAAATTGTCTAGCTAAAGATATTGACTTAACACAGAATGATTTGGACAAAGATTTATCCTCAAACGAGAGGACAAATAACAGTAGCAACAACGACAAACGGCCGTTCACAGAGTGCGTTCCTAGTGTTAAGGAACCTTCGTACCTAGAAATAACATCACAAAACAACAATGAAAATAGAATATCAAGAAGTAAAGATGAACTTGACGAAGAAAACTGTCGTAATAGCGAAGAAGAAATATTGGAATTGGACTTGACAGATTTACAAAGCAGTCCAGCTTTACTAAAGCCTCAAACTTCATGTTTAGATATTCGGAATACCGGTGATAACAAAGACAATACATCTACAGATAACGATAAGGATAGTACAAGCCACAGTGTAATTGATTTATCAGATCATGTAGAAAACACACAGGTTTACGAAGAACGAGACATTATTGATTTGGAAGGAGACACATGCAGGATCTGTCATTGTGGAGATGAAACGGAGGTGCTTATGAGTCCATGTCTATGCACTGGAACAGTCAAATACGTGCATCAATCGTGTCTCATGGACTGGCTGAAGCGATGTGTAAAGACAAAATGTGAACTATgtttatataatttttctgTACATCGGAAGACAAAACCTCTGAAGAAGTGGCGTCGCCCTGATCAGAAGCCAACGCCCATCATCTGGCTCTTGACCTTCGTTGTAGCCCTGACCCTAAACATTGCTTCTATCGCTAAAGATGGCAGTCAGAAGTGTGTCTCCAACCCGTGTATTATCTTCTACGTGGTGGGCGCCTTGGGAGCCATGCTGGGGTTCGCTTTCTTTTACCATTGGTTGATAGTTAGTATCAGATATATAAAGCAATGGATGGCGCTGAATGAGGAATGGACGCTTGTGGAATCTGATAAAACTAAGGTCATTAAAGGCGAGGAAAACATGGCTGCATCGAACAAGTCTATTGAAAGCAAAGACCAAAGAATTGAAGTCCAAGTCGTGTAATACGCATGAGTGTAGATACGTTTGTTGCGGCTGGCAAGAAGTAACGCAGGCTACGGGAACAAAATAAAACGTCCCACacgagtaaaaataaaaagggaTTTGGACGAAAATATAATTCGCAGAAgattataaagaaaataacagaaaattaaagtgctactacgacgaaaatcgctcaaacttggattcagctgaaacttcctaaaaatactctttaaaggtccgataatcactgtatgaagtgttttctcgatattcagtacgaaaatatgatatttttacgattattttttggagtctgtgacgtcatacactcaacatcaaacattgctacatatatttctttgtatataaatccttaatttcttttattcctatgaagcccaaagggtggctaatgtgcttatttcacattgcttgtgactataatttatattttggggtgtttgggtatttctttctccctttactactgatattttgatcataaactacaaagaaatgtatggagcgatgttcgatgttgagtgtatgacgtcacagactccaaaaaataatcgtaaaaatatcatattttcgtactgaatatcgagaaaacacttcatacagtgattatcggacctttaaagagtatttttaggaagtttcagctgaatccaagtttgagcgattttgacGTCATCCCCACACAGATAACAGCAGGTCAAGTGCTGCAAGTGGTATTTCCCACGGTATCAATGTTTAGTTATAGACTAAGATATAATCGATCGAACAATATGGCCCATTAAGTTGGGCCGGaaatgaataatatttagAAAATATATCAAGCATATGATGCTTAGCCAATAGTGTAGAAAATATTCCGGTAAATATTTACGTATTGTCAAAACGTTATGGCTAAATGTTCTTTTTGACTAAacatgaattctttctcacattcatagatatatttataaacaCTTTCACAAGAAATAATCgaataaatatacaaaaatattg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TCQ1	E3 ubiquitin-protein ligase MARCHF1 OS=Homo sapiens OX=9606 GN=MARCHF1 PE=1 SV=1
Q6NZQ8	E3 ubiquitin-protein ligase MARCHF1 OS=Mus musculus OX=10090 GN=Marchf1 PE=1 SV=2
Q0VD59	E3 ubiquitin-protein ligase MARCHF8 OS=Bos taurus OX=9913 GN=MARCHF8 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001153 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12906 all species →	RINGv	RING-variant domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011016 all species →	Domain	Zinc finger, RING-CH-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46065 all species →	E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10656	MARCH1_8; E3 ubiquitin-protein ligase MARCH1/8	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.