Gene detail

Detailed information of ENSQPTP00000014607.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031562670.1, probable ATP-dependent RNA helicase DDX31 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000017990

ATGGATTCTGACGATGGACTTATGCTGAACATTGTGGAGTCCAAAAATGATGAGGTTGTGGCTTCGATTCCAGACAAACGAAGTATTACCAAGtggaaagaaagaagacaaCAGAGGAGAAAGAAGGTTACCTCGTTTAAAGAAAAGCAGATCCTAGACAGAAGAGAAAAgacattaaataataataatGATTGTATGATAAGCAGCAACGATCTAAAATTGGATGACCAAGATAGCAGTAAAACTAAAGAATCAACCAAACTCACTTCgaaaccacagGTGATTTCAAGCCTTTTCAGACACAATCCAGAAATCCCTAAAGTTAAAAGctCCAGTAATTCTAAAGACAATGAAAAGGAAGGTCCATCAGATAAACCACTCTTCTCTGGAGACAAGTTTAGTGAGCTTTCTTTATCACCTCATatgGTGTCCAATTTAgaaaataacttacaaatGACAACATTGACCAGCATACAAAGGTCTGCAATACCAGCACTTATTGAAGGCAAAGATGTTTTTGTCAAGTCAAAGACTGGATCAGGAAAAACTCTCTGTTATGCTCTCCCAGTAGTTCACACACTACAAAAGATTAGGCCTAAAATAGAGAGATGTGATGGTCCTTATGCATTGGTTTTGGTCCCAACGAGGGAGctTGCTCTTCAAAGTCTTGGTCTTCTCCAGAAGCTTGTCAAGCCATTTCAGTGGGTCGTCCCAGGATTTGTCATTGGaggagaaaagagaaaatcaGAGAAGGCTAGATTACGTAAAGGTATTAATATCCTAGTGGCTACTCCAGGGCGCTTACTTGATCACATTGAGAAAACAACATGTTTGGATTTGAGGAAGATCAGATGGATAGTACTTGATGAAGCTGACAGATTGCTTGACATGGGATTTGAAAAAGACGTTTCAACAATCCTGCAATCAGTGAAAGATAAAATACCAAGTGATGCCAGATGTCAGACAATATTAATGTCTGCCACATTGAACAAAGGTGTGGAAAAGCTTGTTCACATGTTCTTGTCAGATCCTCAGTTTGTGGATGAAAGTGGAACAAAAGATGCTACTGACAGACAAACAAATGagcctaaaaataaaatacatgcTGTACAAGAAGACGACACTCAAAACACCCCACAGCAGTTAAAACAGTTTTTTGTGATCGTACCCAGTAAGATGAGGCTCATAGCACTGGCTGCATTTCTTATTGCAAAACACAATGTTAGTCACCCCTGTAAGAGTATTGTGTTTCTATCAAGTCGAGACTCAGTGGACTTTCATCATACTTTGTTGCTATCAGTGCTTTGTGAAGCTGAGGGAAGGAAATTCAAGCTGTTTAAACTTCACGGCAACATGTCCCAATCTGAGCGTACAGAAGTGTTCAGTGAGTATAGTTCTTGTACAGGAGGTGTTTTACTATGCACGGACGTAGCTGCACGAGGCCTTGACCTCCCTAATGTTAACTGGATAGTCCAGTACAATACTCCAGGCAGTGCTGTAGATTATATACATCGAGTAGGACGAACGGCGAGGATTGGTACCGAAGGACAAGCTCTTATCTTTCTCACCCCCTCAGAAGCTGGGTATTTGGATACACTTGCAGAACACTCCATAAGACCAAAAGAAGTGTTAGTCTCAGATATCTTGCGAACTCTTTTGCCTGCTGAGAAAACGAAGCCTGATAAACGAGGAAAGAATAAAGATTCCATTGATCATCAAGTACAAGACACAGCTACAAGTCTGCAGTTGAAATTCGAAGAATTCGTCTTGTCGAATGTAGAGCATATTAAATCTGCTAAAAAAGCTTATCAGTCATTCGTGCGCTCTTATGCCACATTCCCCGCCGATCTAAAACACATATTCCACATCAAGAATCTCCACCTAGGTCACGTGGCTAAAGCATTTGCTCTCAGGGATGCACCCACGGGGATGTTTGGTCAAGGGAAGGACatgaggaagaaagaaaaaacaagGAAAGAGTCACGTGACAGAGCAACATCGAAAAAGAAacgtgggcttcctgtggatgagcatttggctgaagaCACATTTAGTGGACCACgtccaaagaaaagaaaaaagatacaACGGTAG

Transcript

ENSQPTT00000017990

gtgcaaaatacaaaatggcggacgaagttACCTGAATAACCTTCCAAGTTTTTATGACTTTTTAGCCCATTATAATACTTATTGTAAGGTTTTGCACAATGGATTCTGACGATGGACTTATGCTGAACATTGTGGAGTCCAAAAATGATGAGGTTGTGGCTTCGATTCCAGACAAACGAAGTATTACCAAGtggaaagaaagaagacaaCAGAGGAGAAAGAAGGTTACCTCGTTTAAAGAAAAGCAGATCCTAGACAGAAGAGAAAAgacattaaataataataatGATTGTATGATAAGCAGCAACGATCTAAAATTGGATGACCAAGATAGCAGTAAAACTAAAGAATCAACCAAACTCACTTCgaaaccacagGTGATTTCAAGCCTTTTCAGACACAATCCAGAAATCCCTAAAGTTAAAAGctCCAGTAATTCTAAAGACAATGAAAAGGAAGGTCCATCAGATAAACCACTCTTCTCTGGAGACAAGTTTAGTGAGCTTTCTTTATCACCTCATatgGTGTCCAATTTAgaaaataacttacaaatGACAACATTGACCAGCATACAAAGGTCTGCAATACCAGCACTTATTGAAGGCAAAGATGTTTTTGTCAAGTCAAAGACTGGATCAGGAAAAACTCTCTGTTATGCTCTCCCAGTAGTTCACACACTACAAAAGATTAGGCCTAAAATAGAGAGATGTGATGGTCCTTATGCATTGGTTTTGGTCCCAACGAGGGAGctTGCTCTTCAAAGTCTTGGTCTTCTCCAGAAGCTTGTCAAGCCATTTCAGTGGGTCGTCCCAGGATTTGTCATTGGaggagaaaagagaaaatcaGAGAAGGCTAGATTACGTAAAGGTATTAATATCCTAGTGGCTACTCCAGGGCGCTTACTTGATCACATTGAGAAAACAACATGTTTGGATTTGAGGAAGATCAGATGGATAGTACTTGATGAAGCTGACAGATTGCTTGACATGGGATTTGAAAAAGACGTTTCAACAATCCTGCAATCAGTGAAAGATAAAATACCAAGTGATGCCAGATGTCAGACAATATTAATGTCTGCCACATTGAACAAAGGTGTGGAAAAGCTTGTTCACATGTTCTTGTCAGATCCTCAGTTTGTGGATGAAAGTGGAACAAAAGATGCTACTGACAGACAAACAAATGagcctaaaaataaaatacatgcTGTACAAGAAGACGACACTCAAAACACCCCACAGCAGTTAAAACAGTTTTTTGTGATCGTACCCAGTAAGATGAGGCTCATAGCACTGGCTGCATTTCTTATTGCAAAACACAATGTTAGTCACCCCTGTAAGAGTATTGTGTTTCTATCAAGTCGAGACTCAGTGGACTTTCATCATACTTTGTTGCTATCAGTGCTTTGTGAAGCTGAGGGAAGGAAATTCAAGCTGTTTAAACTTCACGGCAACATGTCCCAATCTGAGCGTACAGAAGTGTTCAGTGAGTATAGTTCTTGTACAGGAGGTGTTTTACTATGCACGGACGTAGCTGCACGAGGCCTTGACCTCCCTAATGTTAACTGGATAGTCCAGTACAATACTCCAGGCAGTGCTGTAGATTATATACATCGAGTAGGACGAACGGCGAGGATTGGTACCGAAGGACAAGCTCTTATCTTTCTCACCCCCTCAGAAGCTGGGTATTTGGATACACTTGCAGAACACTCCATAAGACCAAAAGAAGTGTTAGTCTCAGATATCTTGCGAACTCTTTTGCCTGCTGAGAAAACGAAGCCTGATAAACGAGGAAAGAATAAAGATTCCATTGATCATCAAGTACAAGACACAGCTACAAGTCTGCAGTTGAAATTCGAAGAATTCGTCTTGTCGAATGTAGAGCATATTAAATCTGCTAAAAAAGCTTATCAGTCATTCGTGCGCTCTTATGCCACATTCCCCGCCGATCTAAAACACATATTCCACATCAAGAATCTCCACCTAGGTCACGTGGCTAAAGCATTTGCTCTCAGGGATGCACCCACGGGGATGTTTGGTCAAGGGAAGGACatgaggaagaaagaaaaaacaagGAAAGAGTCACGTGACAGAGCAACATCGAAAAAGAAacgtgggcttcctgtggatgagcatttggctgaagaCACATTTAGTGGACCACgtccaaagaaaagaaaaaagatacaACGGTAGCAATAcagaggaaaaaataaaatgaatgactAGAATGAATGGATTTCTGCATGCATCGCATTTCATATGGTCTGGTCGTAAAGCAAACTAAAGACACGCTGGATGCCTCTTGTGTACTTTTAAACAGCCTTCAATAAACAGAAAATGGAAGAATGGAAGTTTTACAGATggaaaaagaataagaaataGGCAAGAAACCATTGTACTATATGAATTGcttgattttattttgtaattaCAGTTATCTAAtacttatatatatagtaattATGCAATACACCCTtcttaaaaagtgtctcaAATGCGAGgttaacatggaaatacaaaagaaatgccacaaattccatcgagaaaaagtgtgatttcttttatatttccaTGTTGGCATCGCATCCACGatacttttgagaagggtccacTGAATTATTATAACACCAATAACATGGAAGTAAATACTTGCCCAGGATAACAGATTCCCAAATATTTTTACATCTCTTAATAATTAAAAGTATTGAAATactaataaaatttatttaagtgcctcatatgatatatataatagGTCATACAGACTGTGGATTGAATGGCTGCCAATAAGTGCCTCGTATGATATATATACTAGGTGATTCTGACTGTGGATTGAATGCCTGCCAATAAATGTTCAACTGTGAGCAGCCACCCTCTTACCTCCAGAATCagtaaaaaacttttttttttttataatacTGAGATCTAGAATTCCTGTGGATGGGTGGAGATTGAAGCCGAGTAGGAGTAGAAAAAAACCCAACTCATAGGAGGGAAAAAAGGGATTGTTAACAGTCTGTCAAGTGTCACTTCTAAACACCTTCCATCCACatgggagagaaagagaggcGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NZQ2	ATP-dependent DNA helicase DDX31 OS=Mus musculus OX=10090 GN=Ddx31 PE=2 SV=2
Q9H8H2	ATP-dependent DNA helicase DDX31 OS=Homo sapiens OX=9606 GN=DDX31 PE=1 SV=2
Q86B47	Probable ATP-dependent RNA helicase CG8611 OS=Drosophila melanogaster OX=7227 GN=CG8611 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005647 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13959 all species →	DUF4217	Domain of unknown function (DUF4217)	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR025313 all species →	Domain	Domain of unknown function DUF4217	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24031 all species →	RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14806	DDX31, DBP7; ATP-dependent RNA helicase DDX31/DBP7	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.