Gene detail

Detailed information of ENSQPTP00000014630.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031572372.1, flap endonuclease GEN homolog 1-like, partial [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Sequence

CDS

ENSQPTT00000018018

ATGGATGCTAAAAGGATTGTTGATGGATGCATTACAAATGATGGGGATGCTTTTCTATATGGAGCAAGAACTGTTTACAAGGACTTGTGCATTACTAACAAGGAGTGCACGATGGACTTTTATTGTATGGATGATGTTGAGACTaaaatttGTCTGAACAGGGAAAAGCTTGTCAGTCTTGCTATTCTTCTTGGCTGTGACTATCTTCCTCAAGGAGTACCAGGTGTTGGTAAAGAGATGGGATTGAAACTCGTGCAAGCCTTACAAGGTGTTAACCTACTTCAGAGATTTCAAGACTGGAGCAACTTCAAAGTGTGTGAAGATGATATGTCCAAGATTGAGAAAACTGTGAAGCAAAAAGCTTCAAAAGTTTCTGGATTCCCCAACGAAGCGGTTATCAATGAATTCATGTGTCCTAAACTAAAAACACAGCACCTAACAATTCCAAAGGGCAACAAGTGTCCCGATGTTAAAGGATTACAGGAGTTTTGTTTGAATTATTTGGAGTGGCCTGAAGACTACACTACAGAAAAGATTTTACCTCTTGTGACCTACTGGCAGATGGAAAAGGGGATGTCTGTTAAACATTGTAACCAAAGATGCGTTGTTACTCCTGAAAGAATTGTCAAGGCTAGAGTTCAGAACTGGATCGAATGTTATGAAGTCCTTTGGAAGAATAATGACATTGGGGATGCCTGTCAATCAACCTTCGTTACCATAGAAACAAGATCGCTGTTCGGACAGGTCTACCCTGTTCTTGTAGAGGAATTTGAAGTATTGCAAAACCACAAAAAGACCAAGAAGTCaggtaaaagaaaagcaaaagatAATTCAAAAGACTTGCCAAACGATAACAGCAATCCAGTGGAAGAACTCTGCAGTAATCTCGATGCCTTGTCGCTGGCTGTAGAGAGGGACTGTCTTCGACATTCAACGAACCATACAAAACTAAACCATGATGACGAAATAGCAGAGACAGAAATGCAGAACAAACATGCAGGTAACCCATCACTAGATGATGAAAATGTCGTACATGGTTCacaggaaaaacaaaaaagacacgaacaacaacaacaacattatgaagaagaagacgagCAACACCATTGTGAGGAAGCAAAATATGCGAAGAAACATAATTTGGTTCCAAAAGTccaaaatggaaagaaaaatttcaaatgcaaggaaaatttaaaagtaaaagtcGATAGAATGGATAACCTTTTAGATTCGAGTGATACATCTTCCGAAGATGAGATGTCTGATTCTTTGGTCTGTGAGTTTTTTGCTCCTCTGGCGCTGAGGATAGAAGCACAATGCAGTAAAAACAGTCACAACGTGGAGATAGACATTCCTGTTGATGCTGACTCAGTAGATACTAAGAATAtaaagaaaagcaaagaaaagaacgAAATAGATAATGAAGTACAAGTTGTTTTAATCGAATCTAGTGAGGACGAAGAAGAGCGCAATGTTTGTCTAAAATCACGAGGCAAAGAAAATAGTCGCCTGAAGGGGCAAGAAGAGTTATCGCATATCTTGGAGAGACCTGCTTTGGAAGGAGCTAGCTCTAGGAAAGACGATACAAAAACGAGCCAATATGTAGAATCTGATGTTGAAATGACGGCTTTAGGAAGGGGGAATTCGTGCGCTCGAACAGAGCGCGAAATCCATCCTTTGGAAAAAGCAAAGGCTGATGCTGCATTGAACggaaaagaagtaaaaaaagaacTAGGACTCGTACCGTTGGCTAAGGAAACTATATGTTCCAAAGCTGGTTATCATGGCCACATGGCCTCggggaaaatgaaaaatgttggCGCAAAGAATGCGAttgaaatgaagaaagaacCAGTCAACTATGATGAACGGAGTGCCTCTTCGTTGCCTAACAGCGACAGGTCGCTAGAAAAGGGTGGTGGTTCGTCAGCTGTTTCTTTGTCATGTGAAAACAGAGAAAATGCAAGAAAGGTGTCCTCGGGTCGAGAAAGTCGGCTGCATCGTGAGAAAAACATTCGTTCAAATCTGAAAACAAAAGTCATGCAGAGGGTCTATTTTTCTAGCGATtctagtgatgatgatgattcatGGTACTTTGACAGTGGaaatggtggtggtggcagtgttgctgctgctgcttctggtggtggtggtggcagtgttgttgctgctgcttctGGTGGTGTtgatcatggtgatgatgattcatGGTACGTTGACAGTGGAAATGGTGGTGATGGCggtgttgctgctgctgcttctggtggtggtgatggtggtgatgattcATGG

Transcript

ENSQPTT00000018018

TGTACAACTTTGCTTAAACTACTTGGAATACCCTATGTAGAAAGTGCTGGTGAAGCTGAGGCACTCTGTGCTTGGATGGATGCTAAAAGGATTGTTGATGGATGCATTACAAATGATGGGGATGCTTTTCTATATGGAGCAAGAACTGTTTACAAGGACTTGTGCATTACTAACAAGGAGTGCACGATGGACTTTTATTGTATGGATGATGTTGAGACTaaaatttGTCTGAACAGGGAAAAGCTTGTCAGTCTTGCTATTCTTCTTGGCTGTGACTATCTTCCTCAAGGAGTACCAGGTGTTGGTAAAGAGATGGGATTGAAACTCGTGCAAGCCTTACAAGGTGTTAACCTACTTCAGAGATTTCAAGACTGGAGCAACTTCAAAGTGTGTGAAGATGATATGTCCAAGATTGAGAAAACTGTGAAGCAAAAAGCTTCAAAAGTTTCTGGATTCCCCAACGAAGCGGTTATCAATGAATTCATGTGTCCTAAACTAAAAACACAGCACCTAACAATTCCAAAGGGCAACAAGTGTCCCGATGTTAAAGGATTACAGGAGTTTTGTTTGAATTATTTGGAGTGGCCTGAAGACTACACTACAGAAAAGATTTTACCTCTTGTGACCTACTGGCAGATGGAAAAGGGGATGTCTGTTAAACATTGTAACCAAAGATGCGTTGTTACTCCTGAAAGAATTGTCAAGGCTAGAGTTCAGAACTGGATCGAATGTTATGAAGTCCTTTGGAAGAATAATGACATTGGGGATGCCTGTCAATCAACCTTCGTTACCATAGAAACAAGATCGCTGTTCGGACAGGTCTACCCTGTTCTTGTAGAGGAATTTGAAGTATTGCAAAACCACAAAAAGACCAAGAAGTCaggtaaaagaaaagcaaaagatAATTCAAAAGACTTGCCAAACGATAACAGCAATCCAGTGGAAGAACTCTGCAGTAATCTCGATGCCTTGTCGCTGGCTGTAGAGAGGGACTGTCTTCGACATTCAACGAACCATACAAAACTAAACCATGATGACGAAATAGCAGAGACAGAAATGCAGAACAAACATGCAGGTAACCCATCACTAGATGATGAAAATGTCGTACATGGTTCacaggaaaaacaaaaaagacacgaacaacaacaacaacattatgaagaagaagacgagCAACACCATTGTGAGGAAGCAAAATATGCGAAGAAACATAATTTGGTTCCAAAAGTccaaaatggaaagaaaaatttcaaatgcaaggaaaatttaaaagtaaaagtcGATAGAATGGATAACCTTTTAGATTCGAGTGATACATCTTCCGAAGATGAGATGTCTGATTCTTTGGTCTGTGAGTTTTTTGCTCCTCTGGCGCTGAGGATAGAAGCACAATGCAGTAAAAACAGTCACAACGTGGAGATAGACATTCCTGTTGATGCTGACTCAGTAGATACTAAGAATAtaaagaaaagcaaagaaaagaacgAAATAGATAATGAAGTACAAGTTGTTTTAATCGAATCTAGTGAGGACGAAGAAGAGCGCAATGTTTGTCTAAAATCACGAGGCAAAGAAAATAGTCGCCTGAAGGGGCAAGAAGAGTTATCGCATATCTTGGAGAGACCTGCTTTGGAAGGAGCTAGCTCTAGGAAAGACGATACAAAAACGAGCCAATATGTAGAATCTGATGTTGAAATGACGGCTTTAGGAAGGGGGAATTCGTGCGCTCGAACAGAGCGCGAAATCCATCCTTTGGAAAAAGCAAAGGCTGATGCTGCATTGAACggaaaagaagtaaaaaaagaacTAGGACTCGTACCGTTGGCTAAGGAAACTATATGTTCCAAAGCTGGTTATCATGGCCACATGGCCTCggggaaaatgaaaaatgttggCGCAAAGAATGCGAttgaaatgaagaaagaacCAGTCAACTATGATGAACGGAGTGCCTCTTCGTTGCCTAACAGCGACAGGTCGCTAGAAAAGGGTGGTGGTTCGTCAGCTGTTTCTTTGTCATGTGAAAACAGAGAAAATGCAAGAAAGGTGTCCTCGGGTCGAGAAAGTCGGCTGCATCGTGAGAAAAACATTCGTTCAAATCTGAAAACAAAAGTCATGCAGAGGGTCTATTTTTCTAGCGATtctagtgatgatgatgattcatGGTACTTTGACAGTGGaaatggtggtggtggcagtgttgctgctgctgcttctggtggtggtggtggcagtgttgttgctgctgcttctGGTGGTGTtgatcatggtgatgatgattcatGGTACGTTGACAGTGGAAATGGTGGTGATGGCggtgttgctgctgctgcttctggtggtggtgatggtggtgatgattcATGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q17RS7	Flap endonuclease GEN homolog 1 OS=Homo sapiens OX=9606 GN=GEN1 PE=1 SV=2
Q8BMI4	Flap endonuclease GEN homolog 1 OS=Mus musculus OX=10090 GN=Gen1 PE=1 SV=2
Q8W5R1	Single-strand DNA endonuclease 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SEND1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002363 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18704 all species →	Chromo_2	Chromatin organization modifier domain 2	Domain	Interproscan
PF00867 all species →	XPG_I	XPG I-region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041012 all species →	Domain	Flap endonuclease GEN, chromatin organization modifier domain	Interproscan
IPR008918 all species →	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR036279 all species →	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR006084 all species →	Family	XPG/Rad2 endonuclease	Interproscan
IPR006086 all species →	Domain	XPG-I domain	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081 all species →	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0000400 all species →	Molecular Function	four-way junction DNA binding	Interproscan
GO:0017108 all species →	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000014630.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.