Gene detail

Detailed information of ENSQPTP00000014832.1 in Actinia mediterranea

Genomic Location: :...
NR annotation: XP_031569428.1, heterogeneous nuclear ribonucleoprotein F-like isoform X1 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSQPTT00000018257

CTCTAGTATTGGTCACCCTGTGTTATCTGCGGGGTGTTCATCATCTGCACGtgttcagtcagtcagtcagacaAAGCGCGCCATATTGAGTGTTTTACGACTGCATCTGACCTTCCattatctttgttttattctaATTCCCAGCCAGTTTTGATAAGCCAAGCTAAGTATTACCTGACACATCTGCCGGAAAGAATGACAAGTGAAGGAAAGATCGAATCTGAGGTGGGTAGGGCCGCTTTGAATCCAGACTTTGTGCTCGGGAAGTTTGGACTCAAAATGGCGTCTCATGTCGAAGCGATGGAGGGGTCATCTCGAGAGTATGTGGTCCGTGCAAGGGGTCTGCCCTGGTCAGCCACCCAGGAGGATGTATATAAATTCTTTAGTGACTGCAATATTATTGGAGGTCAAAATGGAGTTCATTTTACTTTTGCTGTTGATGGAAGACCAAGTGGAGAATGCTTTATTGAACTTGCTTCAGAAGGAGATTTGAATACTGCTCTTGAAAAGAACAACCAGCACATGGGAAAGCGATACATTGAAGTGTTCCGCTCCAAGGCTGAGGAAATGGACTGGGTGATCAAGCGCATGGGACCCCCACAAGACAAGGACCTTGAGTCCGTTGTACGTCTTCGTGGTCTGCCATATGGCTGTTCTAAGGAGGAAATAGCACAGTTCTTTACCGGGTTGGAGATTGTACCAAATGGGATTACCATCACATTAGATGAGGAGGGGAAGACAACAGGGGAAGCATTCGTGGAGTTTGCTTCACCAGAAATAGCCGGGCAAGCCATGCAAAAACACAAGGAAACCATTGGGCACAGGTACATTGAAATCTTCAAGAGTTctaagtcggacataaggtaTGTTACTAAACCCAAACcgctgatgtcaacaagacCTGGTCCTTATGACAGAATGGGTGGCTTTGGGGGGCCACGATTTGGACGTGGAGACTATGAGAGAAGGTACAGGGGTGGCGGACGAGGAAATTATGGTCCAGTCTTTGGAGGTGGATACAATGGTGGGGGCTTTGGCAATGATTTCAACAGCTAtggaggtggtggtggtggcagAGGCCGTGGAGGACGTGGACGAGGCGGACATGGTGGTAGAGGAGGTGGTGGTGGGTTTGGATTCTCTGGTCATAGTTCAACCGGCCACACTGTCTCAATGAGAGGGCTGCCGTTCGCAGCAAAAGAAACAGACATCAAGCAATTCTTTGCTCCCTTGAATCCTGTCGACATCAAGATCAGGTGGGGTCCTGATGGACGCTGTTCTGGAGAAGCAGAAGTGGACTTTGCCAGTCATTCAGATGCACAGGCAGGCATGTCTAAAGACAGACAGTCGATGGGTCACAGATACATTGAACTCTTCCTGAACTCTGTTCctgatggtagtggtggtagtggATGGGCCCAGCCACCGAACCGAGGGAATGATAACCAGCAGGTTGCagtaggaggaggaggaggagGCGGGAACTACAACAACACTAACATGAATTATGGCAATGCTGCTTCTGCAGGAACCTACAGCAGTAACACAAACTACACCAACTTCAGCAACACTGCAAGCACAGCTGCAAACCAGACATATACCAACCAAGCAAACACTGGAAACTTTGGCAACCAAGTGACTGGCAGTTTTGGGGGGCAACAGACAATAGCCAATCCAGCACAGACCAATATCGCCAACCAGCCATTCAACCAGAGTGCTAACACGTACACAGCTACCCAAAATACTGGGAGTTTTGGGGGGCAGACCAATACTGGGTACGGACAGTCTGGGTATACAAACTATGCCACCCAAAATACTGGGTATACAGCACCACAGACTACGAACTATGCCACCCAAGGAACTCCCCAGGTACAAGCAACCACGCCATTCACCCAGGTGCAACAGCAaccacaacaacagcaacagcagcagcagcaacagccaCAACAGCAACAGACTGGGTATACAGATGCTTATGCAACGACTGGCAGTGATTCATACTTCGCCAGCATGAATCAAATAAAGCAGGATCCTAGTAACCAAGGCAACGCTATGACGTATACTGGTTACTAAGGGCAACCACTATCTTTATTAGAGACATTGGATTGTTAGAAAACTAGAGCTCTTGCAACAGGACTTTCTTGAGGGGAAAAACGTGTATTCAAATAGTGCTGGGGAAAAAGTTATATTTGTATGTAGAGCACTAGAACAATTTATCATTGTAACTAAGATTTACTACTCTTCTCAGTAGACCCAGGCAGTTGcatttcaaatcgaccacgtgatgccaGTGTTGTAACATGTGGACAAGGTTTTACAATACGTGACCAAAGCGCAGTCAAGTTTTAAACTTGTTCATGTGGTATAGCAGTGGTatcacgtggtcgatttgaaatgAACTTGCGATTAGCATAACAGACGCTACGAAATTCATTACTGCCTGGGTCTACTGTTAAGATCGGTTGTAAGAGGTATGT

Protein

Uniprot

Uniprot term	Description
P31943	Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens OX=9606 GN=HNRNPH1 PE=1 SV=4
O35737	Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus OX=10090 GN=Hnrnph1 PE=1 SV=3
P70333	Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus OX=10090 GN=Hnrnph2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050666	Family	Epithelial Splicing Regulatory	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12898	HNRNPF_H; heterogeneous nuclear ribonucleoprotein F/H	-	Spliceosome	ko03041	deepkoala