Gene detail

Detailed information of ENSQPTP00000017296.1 in Actinia mediterranea

Genomic Location: chr17:6570271...6581616
NR annotation: XP_031565783.1, S-adenosylmethionine decarboxylase proenzyme-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSQPTT00000021150

GCTGGTCGTTGTTTGCGTGTTTCACGTGCTCAGTACGTAAATTGTAAggtcttctttttctcttcattATCTCCttcgagaagaaaaaaatctgcATGTATCCTTCTTTACTGGATTTTTCAGTTCTTCTACCATCATGTGTGAAGTTGGATTCTTTGAAGGACCCGAAAAGCTGATGGAAGTATGGTGGAAATGTTTACCACCGGATCAGACCAAGGTCCTCGACAACACCAAGTCTGGGGACCTCAGAACCATATCAAGGCAAAAATGGGAGAGAATTCTGGAGTTGGTGAATTGTCAGATCATAAGTGTGACAAAGAATGAGGAAATGACTGCATATCTTTTGAGTGAGAGTAGCATGTTTGTATCCAAGACACGGGTGATCCTCAAAACATGTGGTCAGACGACGCTACTGTACAGTATTAAACCAATGATGAGCATGGTTAAAGAGGAATGTGGACTGACAGAGATTCAGGATTTTTTCTACTCCAGAATGAGCTTCCTTGAGCCAAAGCTGCAACATGCTCCACACCAGTCATTTGACCAAGAGGCTCAGTGGCTGGATAAGTTATTTCCTAATGGTGCAGCTTATGCCCTGGGAAGGATAAATGGACGTGGATGTTGgTACCTTTACACCCTTAACTCTGGAGTGGATGAACCAGACCAGACCCTAGAGATCTTGATGCAAGACTTGGATCCTGACATAATGAAGGAGTTCTACAAGAATGAGAGTTCTGATGTCAAGCATGTGACAAAGATATCAGGCATTAAGGACTTCATTCCAGAGGCTTTGATTGATGATGCATTGTTTGACCCCTGTGGTTACTCCATGAATGGACTTATCAATGAAAGTTATTTCACCATTCATATCACACCCCAAAAAGAGTGCTCTTATGTTAGCTTTGAGACAAACTTCAAACTTGTTTGTTATAAGGATTTAATCAACAAAGTGTTGTGTGCTTTCAAGCCAGCCAAATTTCTAATGACCTTGTTTGCTAATAAGGATGCACCGTGTAGTCCTTCAATCAAAACATTTGAAAACATAATAACAGGCTACAAAAGAGAAGATTTTCAGTTGtgcaagatgaaagaatacaACTTGAGTTATGGACACTTTAAGAAGGACACGACCAGTCCTATTAGCTGAGACAGGACAATTGTGCATGTCAATAACACCCTATGAgtagaaaataatatatagaTCATAATCAGGATTCCCAGGGTtcagggaaaagtcaggggaaaaaagtcagggaaaagtcaaggaattttttatttagtcaGGGAAATTGCGATTTTCACCTAAAGTTAGGGAATTTTGTTTAAAGTTAACCATGAGTATCCGTGTGATACTCATACTGTTTGCAATTTTCGAATAGACTGATAAATCTTTTCAAGTAATGAAAACAATATTGAAGTATCCTGTGTAATATGATAAGAGCAGGGCCTAGGTAAAAGTTAGGCATGTGGCCCATGCTTGCCCGTGCGGCTCAACAAGGTCAGTGAAAACTGTTATTTAGtcagggaaaagtcagggaatttttattttgaaaatggcTGGGAACCCtgataatgttttcctatGTTTTCAATAGTATGTTCTAGCCACTATCGGATCATTAGCCATGACACATCGAAAAGAcggaaaatcttttttttttatgtcaTACTAGTATGCCGAGCTACGCTGGTCAAAAATTCAATCTTGCACCTTCTGTGGTCTCTCAGAAATATTAGTAACCTCTACTGCCTATGCAAGAAAATGCAGTTTTGCTGCTGCAATACAAATGGCAAGCTAtttaaatagatttttttcgagttccaaattaccgctgtgtttcttgattacaggctcatttactcaggcttagcctcgattttgtgtagaatattcacgtgtcccagtcaaggtccgtcaagtttcaaagtgtttgtattgttgaagttgtgcattctttactttaccgttggtatttgtgaatatgtAAACACTGATGCGAGGcggctaaccctgtgtaaatgagtctgtaatcaaggaacacagcggtaatttagaactcgaaaatggtctattgcaACATGCTGAACGATGATAGGTGTTTGTAGAATAATAATAGCTTTAgatattttatgaaaataaacaTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P79888	S-adenosylmethionine decarboxylase proenzyme OS=Xenopus laevis OX=8355 GN=amd1 PE=2 SV=1
P50243	S-adenosylmethionine decarboxylase proenzyme OS=Bos taurus OX=9913 GN=AMD1 PE=1 SV=1
P17707	S-adenosylmethionine decarboxylase proenzyme OS=Homo sapiens OX=9606 GN=AMD1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003295 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01536 all species →	SAM_decarbox	Adenosylmethionine decarboxylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018166 all species →	Conserved_site	S-adenosylmethionine decarboxylase, conserved site	Interproscan
IPR048283 all species →	Family	S-adenosylmethionine decarboxylase-like	Interproscan
IPR016067 all species →	Homologous_superfamily	S-adenosylmethionine decarboxylase, core	Interproscan
IPR001985 all species →	Family	S-adenosylmethionine decarboxylase, eukaryotes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11570 all species →	S-ADENOSYLMETHIONINE DECARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004014 all species →	Molecular Function	adenosylmethionine decarboxylase activity	Interproscan
GO:0008295 all species →	Biological Process	spermidine biosynthetic process	Interproscan
GO:0006597 all species →	Biological Process	spermine biosynthetic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000017296.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.