Gene detail

Detailed information of ENSQPTP00000017371.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031569813.1, uncharacterized protein LOC116304247 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P63237	Cold shock-like protein CspE OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 GN=cspE PE=3 SV=2
P63238	Cold shock-like protein CspE OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=cspE PE=3 SV=2
Q89A90	Cold shock-like protein CspE OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=cspE PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005139 (this species only)
Transcription factor family	CSD · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00313 all species →	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR051373 all species →	Family	Lin-28 homolog RNA-binding protein	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR011129 all species →	Domain	Cold shock domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR002059 all species →	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46109 all species →	PROTEIN LIN-28	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031054 all species →	Biological Process	pre-miRNA processing	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000017371.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.