Gene detail

Detailed information of ENSQPTP00000017445.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031569586.1, splicing factor U2AF 50 kDa subunit-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000021339

GTCTGATGTCATCCTGCACGAGTATCCCTCATGGCGTCCATGTTGAATGCATTCAGTCTTTAGTCGTTTGTCAAACTTTATCATTCTTTAGCTTTATTGATATACTATTACGACAAATATGACTTCATTTGAAAGCCCAAAAATGAAGGAAGAAGATGATATCGGTGCTACGATAAGCAGCTTGAGAAAAGACGTAGAAAACGGACGAGAAGGACGAGGGCGCGAAGACAGCTTCGAAGGTGGCAGGGACAGACCAAGAGACCGTGATCGGGATCGTGATAGAGGAAGAGATCGTGACAGAGATCGAGATAGGGACCGTGACAGAGATCGTGGTGAACGAAGGAGGAGAGATCGGTCCAGGAGTCGAAGCAGGGATAGAAATGATCGAAGGCACCCTTCAGATAGAGATAGAGGTAGAGAAAGGCCTAGAAGAGATAGACACAGATCACCATCACCAAAAAGAGAtacaaatattgaaaaaagaaaaagagagacGTTATGGGATATTCCTCCAGTGGGATTTGAGAATGTGACACCGATGGAGTACAAACAAATGAGAGCATCTGGAGCTATCCCCATGGCACCAACTGTTCCTGGCACTGTACCAATACCTAGTGCTGCTGTGCCAGGTATACCAGCACCAACACCTGCCCAGGCAGCAATCACAGCTGCTACGTTAGCTAGTCTTCCACACAGTCAAATGACTCGACAAGCCAGACGTCTGTATGTCGGCAATATTCCATTTGGAATAACAGAGGAGCTTCAGAACTTGATGATAGAATTCTTTAATGCTAAAATGCATGAAGCCAAACTAAATACAGCACCAGGGAATCCAGTTATTGCTGCACAGATCAACACGGAACAGAACTTTGCTTTCATTGAGCTTCGTTCTGTGGAGGAAACCACCCAAGCAATGGCATTTGATGGCATCATTTTACAGGGTCAAGCCTTGAAAATAAGAAGACCAAAAGACTATCAGCCTATCCCAGGAATGTCAGaAACTGCTTCAGTTCATGTTCCAGGTGTTGTATCAACAGTTGTGCCTGATTCAGCCCACAAGATATTTATTGGTGGTTTACCTAACTATCTCAATGAAGATCAGGTCAAAGAGTTATTGGCATCATTTGGTGACCTCCGAGCATTTAACCTTGTTAAAGACAGTGCTACAGGATTATCTAAGGGCTATGCATTCTGTGAATACGTGGAGATTGGAATAACAGATGTTGCTATTCAAGGACTGAATGGAATGCAACTAGGAGAAAAGAAGTTGATTGTACAGAGAGCAAGTGTAGGTGCCAAACAGAACATCAACAATCCTCAAGCCATCAACATGCTTCCAGCTCAGTTCCAGATTCCAGGGCTTGACATTAATGCAGCAACTCAAATTGGACACCAGATGACAGAGGTTATTCAACTGATGAACATGGTCACCCCAGAAGAACTCTgtgatgatgaagaatttGAAGaaATCTTTGATGACGTAAGAGAAGAGTGTAGCAAGTATGGCCGTGTTGTAAGCATGGAGATACCCAGACCAGTAGAAGGAGAAGAGCCTCCAGGTTGTGGCAAGATCTTCGTAGAGTTTGCATCTATAGATGATGCTGCAGCTGCTTCACAAGCCCTTGGAGGAAGGAAGTTTGCCAACAGAGTAGTAGTTACATCATACTACAGTCCTGAGGaataccataagaagatattTTATTGATAATCCTAGTTATCGATAAATCTTGTCAATATGATAGCAATGACAGTGTAGATCGTGTTATTGGCATTTCCttgcaattcttttgtttttaccaaGTACCATTGTTAATCGCACTATGTGCCCTTGTATAGTGCACTTGTTAgtgtgaagtcattaaacccatgaaatagatattagattaatacacattagtagacactaattccattgttttcttttgtctatttgactattacacattggctagtatatttttttcatgggttaaatgacttcactctattgTAGTAGCATTGACAGTTTAGCTGATTCTGTCAGAATTTGTTTCTGCATGCTATTCATGATAGTTCTATCCAGACAACTCCAGATATATTTTGTCATCTGTCTATAACCTTTacacagggcttaaaataacagccgTTCAGTCGCTGGTCATGATCACATGCCAAATTAGTTTAGCTTAGTCATACATCACTTCTGGCTCACATTACTGGCCAAGATGACCAGCAAGGTAAAGAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P26368	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens OX=9606 GN=U2AF2 PE=1 SV=4
P26369	Splicing factor U2AF 65 kDa subunit OS=Mus musculus OX=10090 GN=U2af2 PE=1 SV=3
Q24562	Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster OX=7227 GN=U2af50 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003692 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003954 all species →	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR006529 all species →	Family	U2 snRNP auxilliary factor, large subunit, splicing factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23139 all species →	RNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0000243 all species →	Cellular Component	commitment complex	Interproscan
GO:0008187 all species →	Molecular Function	poly-pyrimidine tract binding	Interproscan
GO:0016607 all species →	Cellular Component	nuclear speck	Interproscan
GO:0030628 all species →	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan
GO:0071004 all species →	Cellular Component	U2-type prespliceosome	Interproscan
GO:0089701 all species →	Cellular Component	U2AF complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12837	U2AF2; splicing factor U2AF 65 kDa subunit	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.