Gene detail

Detailed information of ENSQPTP00000017818.1 in Actinia mediterranea

Genomic Location: chr16:6459134...6477404
NR annotation: XP_031575266.1, speract receptor-like isoform X1 [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSQPTT00000021827

ATGAGACCGATTCTCGTTTATTGTGTGACCGCCTTCATTCTTGCACTGACTTTAAGCGCATCTATTGTTACTGGGAAAAGCAAAAAAGACGTTAAAATTGGATTATTAATACCATTTACATATGCTAGCCGTTTGTCGAACTATTTCCATCGTGGAAAGTACTATGCTTCCGCTATTAGTATTGCTGTGGATGAGATCAATCGACGACCAGACCTTCTTCCTGGCAGGAACATTTCGTTTATATGGAACAACACAGAATGTGACGAACTCAAAACGCTTCGCGCGCTGGTGTACCAACTCAACGCTGGTGTCTCTGGATTTATAGGCCCTGGGTGTACCTGTACGACTGCCGCTCGCAGCGCTGCTGCTTTCAACGTTTCCATGATATCATATATGTGCAGCAATCCCGAAGTATCAGACAAGAAGCTTTACCCTACATTCGCAAGAACATTTGCTATTGACACCAAACTCACTCCTAGCTTACTCTCTCTACTAAAATACTACCAATGGCGTAGAGTGGCAATAATTTACGAGAATGTTACCAAATGgatagaaatgaaaaatactatCACAAAACGACTGACAGAGAATGGAGTTCACATCGCGCTGGAGCTGATGATGAGTCCGTCAAGCGTCTATCGTCCGCAGAACCATTCCAAAGTGTACAAAGATATCCTGGGACAGATCAAGACTGAAGCACGAAttGTTATATTCGTGACGGAGTTCTTCCTCGCGAGAGAAGGAATGCTCCACGCTCTAGACCATGGGATGATTAACGGTGACTACGTTTTTATCATGTTTGAACTGGATCAAAATCAAGTCAGTTCATACGCCAAACAACCATTTAAATGGCTGTTCAGCAGCTATCCAAGCACTCTCAATCGTTATAACCATTTACAGCGAGCGTTTGCTGCTGTGTTTGTTCTTGCTGTTAAGAGTCCTTCTTCCAAAAACTATTCGTTGTTTCAAGAAGAGCTAAAACGAAGAGCTCCTGAGGCGCCTTTTTATAGTACAGTATACAAGGGCTTCTTGTGGGATAGCAACAAGCATAACGATTCTCTGAACTTTCCCTCTAAAAGTGGCGAGACGAAATTTAAAGCTAAAGAGACTCAGCCTCCCATCTATGGTGCGTACTTGTACGATGCTGTCTACCAGTTTGCCGTGGCACTCAACAAATCCTACGCCATAGAGGAAAATCCAACAGGGAAAACCATCATCGATCAACTAAGAGGAATACAATACGACAGTATTTTAGGGTATAAGATCCATTTCGACAACCGAGGAAACTCCGAATTCAACCTCACACTACTGGATCTATACTCCAAACCTAATGCCAAGTATGCAGAAATGGTCCCAGTTGGCGACTTTCAGATATTCTACGGCAACAGTTCAAGTGCTGGTGAACAGATATTCATTCCCAGGTCAAACGTTAGCATCATCTGGCCTGGTGACAAAGGACCACCTAAAGATTCACCGGCTTGTGGTTTCCATGGTGAGCTTTGTCCATCGCCTGTTGGTGACGaTGCCAAGATGAAGATAATCGCTGGTGTGTCGGGAGCTTTGGCGTTACTCTCATTGTTACTACTGCTAAATATTTACAGACAGTATCGACTTGAGAAAGAGCTCAAAAGTTTGCTGTGGAAAATTGATTACAACGAGATTTGTTtcgagaagaaaagaaactcAGCTTGTTCACTGGCGAGTTGCTTTGGCGTTGGCATGAGAGAAAATCATGTATTGGAGCCATTACTTTGTGACGATGAGGCTGAGGAGCTTTACAAACATACGTTTATTGGTATCTTCAAGGGCAATCTGGTAGCTGTCAAACGATTGGCTAAGAAGAATGTGGATATGACAAGAACAGTACTTATGGAGCTCAAACAGATGAGAGATCTTAGACACGATAATCTTGTCCAGTTCATCGGCGCATGCGTAGACTCGCCCAATATTTGCATAGTGACACAGTATTGTCAGAAAGGAAGCTTACAGGATATTTTGCAAAACAAAGATGTCAAGCTGGATCACATGTTCATAGCTTCGTTAGTTTCAGACATTGTTCGGGGAATGGTGTTCCTACAGAGTGTTGATATCAAATCTCACGGGAACCTCAAGTCCTCCAACTGCTTGGTTGATAGTCGATGGGTCGTGAAGATTTCCGACTTTGGTCTTCCTACGTTTCGTGCCAAACAGACAAAGACATTCCCTTCAGAGTCCCTTTATTATACAGATCTTCTTTGGGTTGCTCCTGAAATCCTCAGACTGGCAAATCGGCCGGCCAGGGGAACTCAAAAGGGAGACGTTTACAGTTTTGCTATCATTCTATCAGAGTTCCACACAAGAGAAGAACCATTCAGTGCTAATTACATGGATCCAAAAGAAATCGTCCGACGGGTCCAAAACGCGGAGTTCCCTCCATTCCGCCCCACCGTGCCCGTGCTGATTGCTGGCGTGGAAGAACTACGCGAACTGATGAAACAATGTTGGCAAGAAGATCCCGACTTGAGACCTGATTTTAACGAAATTAGGAAAATCATGAACAAGATACTGATCAATAATGGAATGAAAACCAACATTTTTGATAACATTTGCTACATGATGGAGAAATACGCAGATAGTCTCGAGGAGCTAGTTATGGAGAAAACTGGTCAGTTGatcgaagaaaagaaaaagacagacGCTTTACTGGAACGCATGTTACCAAGACCGGTAACAGAACAGCTAAAGCGAGGCAAAGCAGTGGAAGCAGAGAGCTTCCACGAAGTGACGATATATTTCAGTGATATTGTAGGTTTCACAGAGCTTTCGGCAGAAAGCTCACCGCTTCAGGTTGTTAGTCTGCTTAACGACCTTTACACACTCTTCGATGACATCATCTGTGAATATGACGTCTACAAGTGCGCTCCTTCTGCCCGGCAGGTGGAGACGATCGGTGACGCATACATGGTGGTCAGCGGTCTACCTATACGCAATGGCTCGAGGCATGCTGGGGAGATTGGACGAATGGCGCTACATCTGATCGAGGCTGTGAAGACTGAGTTCATCGTCAGATACAAACCCAATTATAAGCTGAAACTACGCGTGGGAATACACAGTGGTCCTGTGGTGGCTGGTGTAGTAGGTAACACTATGCCTCGTTACTGTTTGTTCGGTGATACTGTTAACACGGCATCAAGGATGGAGTCCCATGGCGAAGCACTAAGAGTACATATCAGCGAAGATACTAAGAAGATACTTGATCAGTTGGGTGGCTTCATAGTTGAACCCAGAGGAGAAATACACATTAAGGGTAAAGGCAATCAAGCCACGTACTGGCTCGTAGATGTTGCAGATGAGAAACCTTTCCCAAAGCGACGACCAAATTTAAACTCGAATCCCGTGGACTCACCGCTTCTCAGTCTGCCCGGGTTCGCAAAGCCGTGTTTGAGTGGCTCAAATAATTCTCTGTCACTGAAACGCTCGCCATCTTACAGGAAGAACTTCAAGAACCAGTCAGGCTCGCCTATTGGCATGAGGCGATGGCATAGATTCGACAACGAAGATGATAAAGATCAAACTACAAGGTTATGGACTGAAAAAGATGACACCAAATACAGTGTAgtgtga

Transcript

ENSQPTT00000021827

AAATACTAAAGAAATATCGAACAAAGCGTGTTGGGGTTTCGATATTGTTTGTTAATTCTGGTGTTTGTTTGTGAACTCACTGGTATTGGCAGCTCTGCTTAAGGTTGAGATAAACGTCAACTTCTCGTCGACTCCATCACTCAGGATTTGAATCAAGAAGGATTCATCTTCTAGGCGCGTTTGGAATTATCACCTCTACTGCACTAATCATAATCAGCTCCGCTAGAAGCAAACACATCAATTGACCTGTTTTGAACACGGTTCGACCGAGAACGGATCGATGTTAAACAGATCTTAAAATGAGACCGATTCTCGTTTATTGTGTGACCGCCTTCATTCTTGCACTGACTTTAAGCGCATCTATTGTTACTGGGAAAAGCAAAAAAGACGTTAAAATTGGATTATTAATACCATTTACATATGCTAGCCGTTTGTCGAACTATTTCCATCGTGGAAAGTACTATGCTTCCGCTATTAGTATTGCTGTGGATGAGATCAATCGACGACCAGACCTTCTTCCTGGCAGGAACATTTCGTTTATATGGAACAACACAGAATGTGACGAACTCAAAACGCTTCGCGCGCTGGTGTACCAACTCAACGCTGGTGTCTCTGGATTTATAGGCCCTGGGTGTACCTGTACGACTGCCGCTCGCAGCGCTGCTGCTTTCAACGTTTCCATGATATCATATATGTGCAGCAATCCCGAAGTATCAGACAAGAAGCTTTACCCTACATTCGCAAGAACATTTGCTATTGACACCAAACTCACTCCTAGCTTACTCTCTCTACTAAAATACTACCAATGGCGTAGAGTGGCAATAATTTACGAGAATGTTACCAAATGgatagaaatgaaaaatactatCACAAAACGACTGACAGAGAATGGAGTTCACATCGCGCTGGAGCTGATGATGAGTCCGTCAAGCGTCTATCGTCCGCAGAACCATTCCAAAGTGTACAAAGATATCCTGGGACAGATCAAGACTGAAGCACGAAttGTTATATTCGTGACGGAGTTCTTCCTCGCGAGAGAAGGAATGCTCCACGCTCTAGACCATGGGATGATTAACGGTGACTACGTTTTTATCATGTTTGAACTGGATCAAAATCAAGTCAGTTCATACGCCAAACAACCATTTAAATGGCTGTTCAGCAGCTATCCAAGCACTCTCAATCGTTATAACCATTTACAGCGAGCGTTTGCTGCTGTGTTTGTTCTTGCTGTTAAGAGTCCTTCTTCCAAAAACTATTCGTTGTTTCAAGAAGAGCTAAAACGAAGAGCTCCTGAGGCGCCTTTTTATAGTACAGTATACAAGGGCTTCTTGTGGGATAGCAACAAGCATAACGATTCTCTGAACTTTCCCTCTAAAAGTGGCGAGACGAAATTTAAAGCTAAAGAGACTCAGCCTCCCATCTATGGTGCGTACTTGTACGATGCTGTCTACCAGTTTGCCGTGGCACTCAACAAATCCTACGCCATAGAGGAAAATCCAACAGGGAAAACCATCATCGATCAACTAAGAGGAATACAATACGACAGTATTTTAGGGTATAAGATCCATTTCGACAACCGAGGAAACTCCGAATTCAACCTCACACTACTGGATCTATACTCCAAACCTAATGCCAAGTATGCAGAAATGGTCCCAGTTGGCGACTTTCAGATATTCTACGGCAACAGTTCAAGTGCTGGTGAACAGATATTCATTCCCAGGTCAAACGTTAGCATCATCTGGCCTGGTGACAAAGGACCACCTAAAGATTCACCGGCTTGTGGTTTCCATGGTGAGCTTTGTCCATCGCCTGTTGGTGACGaTGCCAAGATGAAGATAATCGCTGGTGTGTCGGGAGCTTTGGCGTTACTCTCATTGTTACTACTGCTAAATATTTACAGACAGTATCGACTTGAGAAAGAGCTCAAAAGTTTGCTGTGGAAAATTGATTACAACGAGATTTGTTtcgagaagaaaagaaactcAGCTTGTTCACTGGCGAGTTGCTTTGGCGTTGGCATGAGAGAAAATCATGTATTGGAGCCATTACTTTGTGACGATGAGGCTGAGGAGCTTTACAAACATACGTTTATTGGTATCTTCAAGGGCAATCTGGTAGCTGTCAAACGATTGGCTAAGAAGAATGTGGATATGACAAGAACAGTACTTATGGAGCTCAAACAGATGAGAGATCTTAGACACGATAATCTTGTCCAGTTCATCGGCGCATGCGTAGACTCGCCCAATATTTGCATAGTGACACAGTATTGTCAGAAAGGAAGCTTACAGGATATTTTGCAAAACAAAGATGTCAAGCTGGATCACATGTTCATAGCTTCGTTAGTTTCAGACATTGTTCGGGGAATGGTGTTCCTACAGAGTGTTGATATCAAATCTCACGGGAACCTCAAGTCCTCCAACTGCTTGGTTGATAGTCGATGGGTCGTGAAGATTTCCGACTTTGGTCTTCCTACGTTTCGTGCCAAACAGACAAAGACATTCCCTTCAGAGTCCCTTTATTATACAGATCTTCTTTGGGTTGCTCCTGAAATCCTCAGACTGGCAAATCGGCCGGCCAGGGGAACTCAAAAGGGAGACGTTTACAGTTTTGCTATCATTCTATCAGAGTTCCACACAAGAGAAGAACCATTCAGTGCTAATTACATGGATCCAAAAGAAATCGTCCGACGGGTCCAAAACGCGGAGTTCCCTCCATTCCGCCCCACCGTGCCCGTGCTGATTGCTGGCGTGGAAGAACTACGCGAACTGATGAAACAATGTTGGCAAGAAGATCCCGACTTGAGACCTGATTTTAACGAAATTAGGAAAATCATGAACAAGATACTGATCAATAATGGAATGAAAACCAACATTTTTGATAACATTTGCTACATGATGGAGAAATACGCAGATAGTCTCGAGGAGCTAGTTATGGAGAAAACTGGTCAGTTGatcgaagaaaagaaaaagacagacGCTTTACTGGAACGCATGTTACCAAGACCGGTAACAGAACAGCTAAAGCGAGGCAAAGCAGTGGAAGCAGAGAGCTTCCACGAAGTGACGATATATTTCAGTGATATTGTAGGTTTCACAGAGCTTTCGGCAGAAAGCTCACCGCTTCAGGTTGTTAGTCTGCTTAACGACCTTTACACACTCTTCGATGACATCATCTGTGAATATGACGTCTACAAGTGCGCTCCTTCTGCCCGGCAGGTGGAGACGATCGGTGACGCATACATGGTGGTCAGCGGTCTACCTATACGCAATGGCTCGAGGCATGCTGGGGAGATTGGACGAATGGCGCTACATCTGATCGAGGCTGTGAAGACTGAGTTCATCGTCAGATACAAACCCAATTATAAGCTGAAACTACGCGTGGGAATACACAGTGGTCCTGTGGTGGCTGGTGTAGTAGGTAACACTATGCCTCGTTACTGTTTGTTCGGTGATACTGTTAACACGGCATCAAGGATGGAGTCCCATGGCGAAGCACTAAGAGTACATATCAGCGAAGATACTAAGAAGATACTTGATCAGTTGGGTGGCTTCATAGTTGAACCCAGAGGAGAAATACACATTAAGGGTAAAGGCAATCAAGCCACGTACTGGCTCGTAGATGTTGCAGATGAGAAACCTTTCCCAAAGCGACGACCAAATTTAAACTCGAATCCCGTGGACTCACCGCTTCTCAGTCTGCCCGGGTTCGCAAAGCCGTGTTTGAGTGGCTCAAATAATTCTCTGTCACTGAAACGCTCGCCATCTTACAGGAAGAACTTCAAGAACCAGTCAGGCTCGCCTATTGGCATGAGGCGATGGCATAGATTCGACAACGAAGATGATAAAGATCAAACTACAAGGTTATGGACTGAAAAAGATGACACCAAATACAGTGTAgtgtgaaaaaatatatatatataaaaggaAATTGTggcaaaaaaaggaaaagaaggtCTCGTGCTACTCACTTGATATTATTATTCCGACTACAAAATGAAGGAACTAAAATAGGAGCATCCTTTAATTAGTTTGATCAAATTACAAAAGAAAGCTACCAAATATATTAACATGAATAAGTAGAGACAATACAAGCTGAAGTCACGTGATGTTATTGACGTCACGTGACATTTTCGATTATTAGGCAAACATAATGTTGGAGCATATAAAAAATTAGCCGTCTTGGAAACCGAGACCACTTGATTTTTCGTCGTGACTTCTCCGCATCGTGAAGGTTTTATAAGGGATTTTAATTGGTGGGTAATGAGCCTATAGGTgctattttgtatattttggaAATAGTAAATTATTTGGAATCCATTGTAGCAAAGGAGAGAGGGAAGGGAGGGGAATTTTGCTTCATTATGAATCCAGAGGGCATTCAGATTCATCGattacttttttctttataaattGCTTTTGCTTTCACGACCCTTGCTAACATGGCGTGATCTTGCCGCTGTTGTAGTAAAACAGGACTCATGGTCAACACGACCAGTCTACACGAATCGTGTAAAAATCCCATAAGAAATGACATTGCAAATAATATAGAAGTTAAAGTTCTGTGTAAATATATTGATGTACATAATCGGAAAAGTACCGATTTTATGTTGCAAcagattttaaattattatatatgataatattattataattttgatTATAGGACATGTTATCTCTGTGATTTAGATAGGTCATAATGTGTGATATAAGAATTTGTAGATCACGAAAAGACTGcgaataatattttaaaatgtacaAAATGTGAAGTAACATATTAAGTAcatactgcgcatgctcatgaattattgagcatgcgcagtacttTTTTATTTGTAGGTCCGcgcttcatttttttcaacatatttatattacaggcaacccagtataATCTATGAAGAACAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P16065	Speract receptor OS=Strongylocentrotus purpuratus OX=7668 PE=2 SV=1
Q07553	Guanylate cyclase 32E OS=Drosophila melanogaster OX=7227 GN=Gyc32E PE=1 SV=4
Q7JQ32	Receptor-type guanylate cyclase Gyc76C OS=Drosophila melanogaster OX=7227 GN=Gyc76C PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000157 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF00211 all species →	Guanylate_cyc	Adenylate and Guanylate cyclase catalytic domain	Domain	Interproscan
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050401 all species →	Family	Cyclic nucleotide synthase	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR029787 all species →	Homologous_superfamily	Nucleotide cyclase	Interproscan
IPR001054 all species →	Domain	Adenylyl cyclase class-3/4/guanylyl cyclase	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR018297 all species →	Conserved_site	Adenylyl cyclase class-4/guanylyl cyclase, conserved site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11920 all species →	GUANYLYL CYCLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001653 all species →	Molecular Function	peptide receptor activity	Interproscan
GO:0004016 all species →	Molecular Function	adenylate cyclase activity	Interproscan
GO:0004383 all species →	Molecular Function	guanylate cyclase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006182 all species →	Biological Process	cGMP biosynthetic process	Interproscan
GO:0007168 all species →	Biological Process	receptor guanylyl cyclase signaling pathway	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0009190 all species →	Biological Process	cyclic nucleotide biosynthetic process	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0016849 all species →	Molecular Function	phosphorus-oxygen lyase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000017818.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →