Gene detail

Detailed information of ENSQPTP00000017969.1 in Actinia mediterranea

Genomic Location: chr17:9638143...9645331
NR annotation: XP_031568522.1, solute carrier organic anion transporter family member 4C1-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSQPTT00000022039

atgaaagagaaaaaagaaaaaatgaattcgAAGTTAAAGAAAGACGATCTTCGTTTTGGATGGGGAAAGTTCAAACCCGATTGTCTCCAGTGTTTCAATGGCCCAAAATGCTTCATGGTATTTCTTGTCATATTCTCCGTAATGCAAGGTATAGCTGTAAACGGTATAACCAAGCTGATTCTACCTTCCATCGAAAAGCGGTTTCAATTCACAGGAACTGAGTTGGGAATCATTTCTGCTGGGAACGACGTCTCGGCGTTGATTATTGTCTGTTTTGTGAGCTTCTACGGTGGTTTTGGCAACAAGATCCGATGGCTGGGCTACGGATCGTTCATCACGGCTATTGGCTGTTTAATTTTCGCTCTTCCCCATGCTCTCATCGGTGCATACTACCCTTCAAGTAACAAAGATGAAAATATCACCTTTACAAGACAAGATCTTTGTAGTGTGAAGGATAAGACGGCGATGGACAACGTGTTGTGTGTGTCCAGCTACGACTCTGATTGGTATTACATACTCATCTTCGTATGTGGTCAACTGCTCATGGGCGCAGGAACCACACCGCTGTACTCTCTTGGGCCCGCGTATATCGATGAGAACGTGAAGCCTAAAAACATGCCTTTATATCTTGGGGTCTGGTTTGCATCGTCTATTATGGGGCCCGGCCTCGGATTTGTATTAGGGGGACTGGTGCTTGGCGTGTTCGTTGATCTAAAGCAGCCAGAGGGAATGGATCTGAACACCGATGACCCACGTTGGATAGGGGCGTGGTGGGTGGGGTACGTCTTTGGTGCTGTCTTTCTCGTTTTTAGCGGAATTGGTTTACTGGCTTTCCCGAGGGAGTTACCAGGTTCCCGTGAGATGAGAGAAAAAGCCATGAAAGCGGGCGATATTCCGAAGGATAACGAACAACTGAAAGGAAACCTCAAGGATATAATCCCTGCTGCCAAAGAACTTGTAACCAACAGAACCTACATCTTCAATACTCTCGCCACATCTTGTGGGTTTTTCTCGGCCGGAATATCCTCATTCTTACCCAAAGTCCTTCAGGACAAGTTTGGTCTTAATCTTACAGAAACTGGCGTTTACTTGGGAGTCATTCTTATCCCAGGAATGTTCTgtGGTGTATTGATCGGTAGTTTGGTCGTGCGTCGGTTCAAAGTCCGAGATTCCtgcaaaatggcggccaaatTCTGTGTGATCTTCTCGTGTGTCGGGATTTTTGGACCGTTGAGCTGGTTCGTTCCTGGCTGTGATCCGGTGAATCTCGCTGGCGTGACTCAACCATATCATAACGGGAGTTTGAACGTCGAGTCAGGGGTCAGCAGTCTTTGTAACCTGGACTGCGCATGCACCAAGGAGTACTTCAACCCAGTGTGTGGATCTGATGGAGTCACGTACATGTCGCCTTGTCACGCGGGATGTTTAGTGAAAGGACCTGGAAATTACAGCAGCTGCAGTTGCGTTCCTCCGCTGATCAACCAGACAGTTAGCGTCGCGGAGAAAGGGTACTGTGATCGTGGTGATGGTTGTTCGAATTTTATTTGGTTCTTGGCCATTATACTTATTCTACTGTTGACTGTGTTCTTGAAGGCAATCCCATCGAAAACTGTTATTCTCAGGTGCGTGCCTTACAACCAGCGTGCGTTTGCGTTGGGTCTACAGTTCGTGTTTTTCCGTGGCCttggttcgattcccagcccAATCTTCTACGGCTTCTTATTCGACAAGAATTGTATGCTGTGGGGGGAGAGCTGCGACGAGGTTGGCCGCTGTTTTGTGTATGACATCAACGCTCTCTCGTATTATTTAGCTGGAATTGGTGTAGCGACAGGATTGTTGGTCATCACGTTCTTCTTCCTGTCATTCTGGTTTTACAAACCCTCGAACGAGGGACCCGAAGAGCTGGCCATGGGTGAGACCTTGATTCAACTGAAAGACAAAAAGCAAGAGGATGACAACGACAACATCGAGCTGGGCTCGCCTGTCAGTGAATCACCTCCTCAGTCACCAGGCGCCACGGACTCTACGGAACTGCTCGGCAAAGAGTCTGAGATTTAA

Transcript

ENSQPTT00000022039

catgaaagagaaaaaagaaaaaatgaattcgAAGTTAAAGAAAGACGATCTTCGTTTTGGATGGGGAAAGTTCAAACCCGATTGTCTCCAGTGTTTCAATGGCCCAAAATGCTTCATGGTATTTCTTGTCATATTCTCCGTAATGCAAGGTATAGCTGTAAACGGTATAACCAAGCTGATTCTACCTTCCATCGAAAAGCGGTTTCAATTCACAGGAACTGAGTTGGGAATCATTTCTGCTGGGAACGACGTCTCGGCGTTGATTATTGTCTGTTTTGTGAGCTTCTACGGTGGTTTTGGCAACAAGATCCGATGGCTGGGCTACGGATCGTTCATCACGGCTATTGGCTGTTTAATTTTCGCTCTTCCCCATGCTCTCATCGGTGCATACTACCCTTCAAGTAACAAAGATGAAAATATCACCTTTACAAGACAAGATCTTTGTAGTGTGAAGGATAAGACGGCGATGGACAACGTGTTGTGTGTGTCCAGCTACGACTCTGATTGGTATTACATACTCATCTTCGTATGTGGTCAACTGCTCATGGGCGCAGGAACCACACCGCTGTACTCTCTTGGGCCCGCGTATATCGATGAGAACGTGAAGCCTAAAAACATGCCTTTATATCTTGGGGTCTGGTTTGCATCGTCTATTATGGGGCCCGGCCTCGGATTTGTATTAGGGGGACTGGTGCTTGGCGTGTTCGTTGATCTAAAGCAGCCAGAGGGAATGGATCTGAACACCGATGACCCACGTTGGATAGGGGCGTGGTGGGTGGGGTACGTCTTTGGTGCTGTCTTTCTCGTTTTTAGCGGAATTGGTTTACTGGCTTTCCCGAGGGAGTTACCAGGTTCCCGTGAGATGAGAGAAAAAGCCATGAAAGCGGGCGATATTCCGAAGGATAACGAACAACTGAAAGGAAACCTCAAGGATATAATCCCTGCTGCCAAAGAACTTGTAACCAACAGAACCTACATCTTCAATACTCTCGCCACATCTTGTGGGTTTTTCTCGGCCGGAATATCCTCATTCTTACCCAAAGTCCTTCAGGACAAGTTTGGTCTTAATCTTACAGAAACTGGCGTTTACTTGGGAGTCATTCTTATCCCAGGAATGTTCTgtGGTGTATTGATCGGTAGTTTGGTCGTGCGTCGGTTCAAAGTCCGAGATTCCtgcaaaatggcggccaaatTCTGTGTGATCTTCTCGTGTGTCGGGATTTTTGGACCGTTGAGCTGGTTCGTTCCTGGCTGTGATCCGGTGAATCTCGCTGGCGTGACTCAACCATATCATAACGGGAGTTTGAACGTCGAGTCAGGGGTCAGCAGTCTTTGTAACCTGGACTGCGCATGCACCAAGGAGTACTTCAACCCAGTGTGTGGATCTGATGGAGTCACGTACATGTCGCCTTGTCACGCGGGATGTTTAGTGAAAGGACCTGGAAATTACAGCAGCTGCAGTTGCGTTCCTCCGCTGATCAACCAGACAGTTAGCGTCGCGGAGAAAGGGTACTGTGATCGTGGTGATGGTTGTTCGAATTTTATTTGGTTCTTGGCCATTATACTTATTCTACTGTTGACTGTGTTCTTGAAGGCAATCCCATCGAAAACTGTTATTCTCAGGTGCGTGCCTTACAACCAGCGTGCGTTTGCGTTGGGTCTACAGTTCGTGTTTTTCCGTGGCCttggttcgattcccagcccAATCTTCTACGGCTTCTTATTCGACAAGAATTGTATGCTGTGGGGGGAGAGCTGCGACGAGGTTGGCCGCTGTTTTGTGTATGACATCAACGCTCTCTCGTATTATTTAGCTGGAATTGGTGTAGCGACAGGATTGTTGGTCATCACGTTCTTCTTCCTGTCATTCTGGTTTTACAAACCCTCGAACGAGGGACCCGAAGAGCTGGCCATGGGTGAGACCTTGATTCAACTGAAAGACAAAAAGCAAGAGGATGACAACGACAACATCGAGCTGGGCTCGCCTGTCAGTGAATCACCTCCTCAGTCACCAGGCGCCACGGACTCTACGGAACTGCTCGGCAAAGAGTCTGAGATTTAACTTTTAACGAGAAACCTAGGTCCAGTTAACGCATGAGAATGATTCAGCTTACATACGACATACGCACCAACCAATCACGTGGTCAGTCTTTTTTGTATTAGACGTTACCACGTGATAACCACACTGAGCATCTACTCCATTTTTGTTAAGAAGCGCGCGCCTCATTCTGTCTTGTAAGGGATTACGAATCACGTGGTCAGTTTTTATATTAGATGTGAGCACGTGTTGACCACGTGAGCATCTACTCCATTTTTGTTCAGAAGCGCGGGACACAATCTGCCTTATAAGGTATTACGAATCACGTGGtcagtttttaaatattagaTGTGAGCACGTGATGACCACGTGAGCATCTACTCCACTTTTGTTGAGAAGCGCGCAACTCATTCAGTCCTGTGAGGGATTGCCTTGTGATTGTCCAGCCGCATTTGATCCACGCGAGCATCTAATGCTTTTTCGAAGAAAATGGTGACTCAATCTTCCTTATAAGGGAGTGTCACGTAATTGTATGATAAAGCACGTGGTCACTTCATTCCATATTTGGAAAGGTCGCGTGACTTCTTTCTATTATGTTAGGGCGGATACTGTGATTAATATGACCAGCCGTCTTAGCATGGGTAACGTGACTACGaaaatccaatatggcggaagGGATCACCTGACGTGATTATGTGAGCAATATGGAATTTTAATTCGATTTCTTATCTATTTAAACTTTTATACTTGGTATAAACACACATGCATTGCTATTATCGCACGAatcaattttttaatta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99N01	Solute carrier organic anion transporter family member 4A1 OS=Rattus norvegicus OX=10116 GN=Slco4a1 PE=2 SV=1
Q71MB6	Solute carrier organic anion transporter family member 4C1 OS=Rattus norvegicus OX=10116 GN=Slco4c1 PE=1 SV=1
Q8BGD4	Solute carrier organic anion transporter family member 4C1 OS=Mus musculus OX=10090 GN=Slco4c1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000331 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF03137 all species →	OATP	Organic Anion Transporter Polypeptide (OATP) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR004156 all species →	Family	Organic anion transporter polypeptide	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11388 all species →	ORGANIC ANION TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14354	SLCO4A; solute carrier organic anion transporter family, member 4A	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.