Gene detail

Detailed information of ENSQPTP00000018160.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031562407.1, tripartite motif-containing protein 3-like isoform X1 [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Sequence

CDS

ENSQPTT00000022294

ATGGAATCGTTTATGGACGATCTTAAGAAGGAAGTCCAATGTTCTTTGTGTAATGATACACTCATAGAACCGAAGATCTTGCCGTGTTTTGACACATTTTGTAAGCCTTGTATTAAAAGACACGCTGAGCTGATCGACGAAGTCAACGTCTTCAAGTGTCCTCGATGCAAATCACAAACTCCTCTACCAGAACCAAGCAGTGTAGAAGATTTACAGCCAAGTCTACTTCATTCAAGAATCTTGAAGGGTCTGGCGTTGGTAGAAGGAGAAAAGGTTTGTTCTGTTTCTGAGAGTCATTCTCCAGCATCTTGGTATTGTTTTGATTGTGATCACTCGCTGTGCGAAGAATGCGAGAAAAACCATTCATTCTTTATCAAAGATCACAAGGTCGTTCGTCTAGCTgatttgaagaaagaagatatTGAGTTCATAATAACAAGAGAAAATCCTTGTAAAAGTCACCCTCATCACAGGTTAGAGTTGTTCTGCGAAGACTGTGATGACATGATTTGCTTGACATGCTTGAAACACGAACACAAGGATCATAAACCGATGTCTTTAGATAAGTTTGCTTCGATCAAGAAAACTGTATTATCAAAGCATCTGCATGTACTAGAGCAGTTGAGATTAGATGACAAGGAGAagcaacaacaagaaaagATTGCCAATACAATCAAACAACAAGGAGAAAAAGCCAAACAAGAAGTGAAAGACAAAACCAAGAAGATCATCGAAATGCTGCAAGAAAACGAAAGAGAATTGCTGAGACAAATCGATGAGAAGTTGGACACAGCCACAACAAACTTGAATATAATTCATAATATTGCAGCCGTCAAGGGATATATCAAGAATGTGATGGAAAGAGGACTGGCAAGTGAAATGATGAACATTCAAGAGACACGATGCTCTCAGAAATTCATCGTCAACCACATTCCACCCTTTTCTCGAGTTGAGTTCGTTCCTAACGAACAGCTGGTGCAAGAAGTGAATTCAGGGCTGGGAGAAATAAGAACTTATTTGAAAACAGACCACACGAACAGCACTATTGAAGTTCAATCTGAGACAGaagcttcaaagaaagaaaagctaaTACTGACAACTAGAATCTTTACAGGAGAACTCAATCATGATCCAAGGGATGTTATAGACGTACAAATCACACCtgaaaaaaatgtgaaaatagaaaagaaacatGTGAGAACTGATGGTAAAGTAGAAGTTGAATTCATGGCTAAAGTAGCTGGTCAGTTGGCAGTAGAGGTTCAAGTGAATGGGAATCATGTATCTAACAGTCCACTAGTGGTGAATGTCAAGCCACAAGAGATGAGAACAACAGGACAGTTTAACACGAAAGGGGTAGATATAGGATCTAGTTTCTTGACAGGTATAGCAGTAAGCAGAGACAAAAACAGGATCGCTGTTGCGAACTATATTTCTCGCTGTGTCCATGTATTCACCACTGATGGAGATCTCTTACTGACGTATGGTAGTCCAGGTAGTGCAAAGGGACAGTTGTGTGGTCCTGTAGGTTTAGCATTTCTGAATGATACAGATTTAATCATAGCAGACAATGGTAATCATAGAATATGTATAGTGAACACTACAACAGGGACATTGGTAAAGACCTTTGGTAACCAAGGTAACGGTGATGGAGAGTTTGTTAATCCATGGGGAGTACACGTTGATGACGATGGTAACATCATTGTGTGTGATACTGGTAATCATCGTGTTCAAGTCTTCACAAGAGACGGTGACTATCAATATCAGTTTGGTTTGACAACACAGGACAAGTTTAATCCATATGATGTGACAACACATGATGGACTGTTTTACGTCAGTGATCGTAGTAATCAGGTTATTCATGTATTTGAGAAGAAAGGTAACGTACCGACTAGAATATCGACGATTGGTGGTAAAGGCAGTGCTGATGGTCAGCTGAATTCACCATATGGCCTGGCTATTGATAATGACCATCATCTACTGGTGTGTGATTATGGTAATAAACGCGTACAAAAATTCACATTGGATGGTCGTTTTGTAGGAAAGACTTTTGATGTAATCAAGGAACCTGCATATATAACTGTTTTAAAGGATGGTCAGATATTAGTTAGTACGAATGGTTCTGGTGTCTTGTGTGTAAAGTAG

Transcript

ENSQPTT00000022294

CAACCAATTCCCTCGACTCTTATCAACATGGAATCGTTTATGGACGATCTTAAGAAGGAAGTCCAATGTTCTTTGTGTAATGATACACTCATAGAACCGAAGATCTTGCCGTGTTTTGACACATTTTGTAAGCCTTGTATTAAAAGACACGCTGAGCTGATCGACGAAGTCAACGTCTTCAAGTGTCCTCGATGCAAATCACAAACTCCTCTACCAGAACCAAGCAGTGTAGAAGATTTACAGCCAAGTCTACTTCATTCAAGAATCTTGAAGGGTCTGGCGTTGGTAGAAGGAGAAAAGGTTTGTTCTGTTTCTGAGAGTCATTCTCCAGCATCTTGGTATTGTTTTGATTGTGATCACTCGCTGTGCGAAGAATGCGAGAAAAACCATTCATTCTTTATCAAAGATCACAAGGTCGTTCGTCTAGCTgatttgaagaaagaagatatTGAGTTCATAATAACAAGAGAAAATCCTTGTAAAAGTCACCCTCATCACAGGTTAGAGTTGTTCTGCGAAGACTGTGATGACATGATTTGCTTGACATGCTTGAAACACGAACACAAGGATCATAAACCGATGTCTTTAGATAAGTTTGCTTCGATCAAGAAAACTGTATTATCAAAGCATCTGCATGTACTAGAGCAGTTGAGATTAGATGACAAGGAGAagcaacaacaagaaaagATTGCCAATACAATCAAACAACAAGGAGAAAAAGCCAAACAAGAAGTGAAAGACAAAACCAAGAAGATCATCGAAATGCTGCAAGAAAACGAAAGAGAATTGCTGAGACAAATCGATGAGAAGTTGGACACAGCCACAACAAACTTGAATATAATTCATAATATTGCAGCCGTCAAGGGATATATCAAGAATGTGATGGAAAGAGGACTGGCAAGTGAAATGATGAACATTCAAGAGACACGATGCTCTCAGAAATTCATCGTCAACCACATTCCACCCTTTTCTCGAGTTGAGTTCGTTCCTAACGAACAGCTGGTGCAAGAAGTGAATTCAGGGCTGGGAGAAATAAGAACTTATTTGAAAACAGACCACACGAACAGCACTATTGAAGTTCAATCTGAGACAGaagcttcaaagaaagaaaagctaaTACTGACAACTAGAATCTTTACAGGAGAACTCAATCATGATCCAAGGGATGTTATAGACGTACAAATCACACCtgaaaaaaatgtgaaaatagaaaagaaacatGTGAGAACTGATGGTAAAGTAGAAGTTGAATTCATGGCTAAAGTAGCTGGTCAGTTGGCAGTAGAGGTTCAAGTGAATGGGAATCATGTATCTAACAGTCCACTAGTGGTGAATGTCAAGCCACAAGAGATGAGAACAACAGGACAGTTTAACACGAAAGGGGTAGATATAGGATCTAGTTTCTTGACAGGTATAGCAGTAAGCAGAGACAAAAACAGGATCGCTGTTGCGAACTATATTTCTCGCTGTGTCCATGTATTCACCACTGATGGAGATCTCTTACTGACGTATGGTAGTCCAGGTAGTGCAAAGGGACAGTTGTGTGGTCCTGTAGGTTTAGCATTTCTGAATGATACAGATTTAATCATAGCAGACAATGGTAATCATAGAATATGTATAGTGAACACTACAACAGGGACATTGGTAAAGACCTTTGGTAACCAAGGTAACGGTGATGGAGAGTTTGTTAATCCATGGGGAGTACACGTTGATGACGATGGTAACATCATTGTGTGTGATACTGGTAATCATCGTGTTCAAGTCTTCACAAGAGACGGTGACTATCAATATCAGTTTGGTTTGACAACACAGGACAAGTTTAATCCATATGATGTGACAACACATGATGGACTGTTTTACGTCAGTGATCGTAGTAATCAGGTTATTCATGTATTTGAGAAGAAAGGTAACGTACCGACTAGAATATCGACGATTGGTGGTAAAGGCAGTGCTGATGGTCAGCTGAATTCACCATATGGCCTGGCTATTGATAATGACCATCATCTACTGGTGTGTGATTATGGTAATAAACGCGTACAAAAATTCACATTGGATGGTCGTTTTGTAGGAAAGACTTTTGATGTAATCAAGGAACCTGCATATATAACTGTTTTAAAGGATGGTCAGATATTAGTTAGTACGAATGGTTCTGGTGTCTTGTGTGTAAAGTAGAATTGTCTGTCGATCTATTATTAATGTCTATATATAACCATCATTATACTCATAACACTATTGATCAATAAGTTGTATCAATACATGCCGAGATTTACTCACTAAAAATCTGTTTAatattcattcgttcgttcacTCTTCCCGACCAATCACAATATGGGTAAGAATTTTTTTCGCGTTTTTCTAACGGTACGTCCAATCAGAAGCCACGTACGACTTTTCTTCACTTATGAGAAATCAAAAGTCGGCAGCATTTGtctttatttcatatataCTGAGATTTATAATTTGTATCTTCTGGTTTGTAAAACCatttcgcgaattttctttgatAATAAGAATGGCAAAACGATTGtgagagaaaattaatgtttttacagacgaactaagctagacatcagttttcaaATTAGTATTGCTTATCTTATGAAAACAGGATAAAGAATGATCGATTAGCTATataaaaatatcgatataagaTTTCAGTAAGGTTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000277 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR047153 all species →	Family	TRIM45/56/19	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462 all species →	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11997	TRIM2_3; tripartite motif-containing protein 2/3	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.