Gene detail

Detailed information of ENSQPTP00000020053.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031552059.1, homeobox protein araucan-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000024572

ATGTGTCAAAATTGACGCTCTTTCTTGTAGCGAACAAGATGAACCGATTGGGAATATTGTTTGGTGCACAGTAGTGTAGAACTGTGTTCAAGGATTTCGTAAATTTGTACACTAAACGCCAGGATAGAAGATACTTTCCCCAGCACATCGTGGCGGCCTCTTTCTCGACTTTATGTTTGGCTCTGACGCTGGCGTTGTGACATTGGATTACGTTacgataatttatttaaatctgAAGTGGTCTGAATTGAATCTGTTTGCTAAGTCGCTGAGTTTTTGATGTTATTACAAGAGTAAGAATGGCTAACTCTACTGCTACCAAGATGCCGTGCTCACAGTTCGGGTGTTCATATTCACCTCAGTTGGTCCTACACGGCAATGGTAGCCCTTGTTGTGATAGTAGTCAACAAATCCAGGATGGTTTACCTGGACAATCCGTCTGTCCGTGTCAACTAGACAGAGTTTTACAGCACCGTATTGCTTCTATGCCCGTTAATGTTCTTCCAAGACCACCGTTTGGGGACGGAGCGTTCACGATTAGTAGCGGTTCAGGGCTATCAGCCTTTTATTCACCACTGACAAGAACGTGTGACTTCAAAGACATGGCACAACCTTGGAGAGATTCATGGTACCTTTCGCAAGCAACTCGAAACCCTTTTGAATTCCACGGCTTTGATCCACATACTCATGCAGCTTGCACTCGCTTTGCAGAAAGATTTTCGCCCATCGATCTAGCAGCCGCTGGAGCAAGGCGAAAAAACGCGACAAGAGAAACGACAAGCACTCTTAAAGCCTGGCTATATGAACACAGAAAGAACCCATATCCAACCAAGGgtgaaaaaataatgttgGCAATATTGACAAAAATGACACTCACTCAAGTATCGACGTGGTTTGCCAATGCTCGAAGGCGActcaagaaagaaaataaaatgaccTGGTCTCCAAGAAATCGTTGCGGAGAAAGAAAAGACGGTGGAGATTCAAGCGACGTGGAGGATATCGATCTGGACATaaatagtgatgatgaaaaaCCATCTGAATCGCAGTCAGACATTAAACTTCAAGaaaacgaagaaaaagaaagtaagaaagaaaatattaagaaaaacGAGGGCAGCGATGAAGAAAAATCTTATCGGGACTATCCCAGTGTTGAGTCTGAAAAATGCGATTTTTTTTGCTCTAATGTCGATGAAACAACAACTGCGGTTCCTACGCCAGCGATAAGGAATCTTCCTGCTATAATAACCAAGAGAGAGCTTGAAGTATCTGGTAAAGTAGAGGACTCGCCTGTGAAAAGTCTTCGAAAGTGGGTCGATGGCTGTTTTTATAATCCACCAATGTCATCGAGTCCAGTTCAGCCTTCAAGTCCTGTACAAAACCATCAATCTCCTCCTTCGATTCAAACACAAAGAACTTCAACAGAAACTCCAGTTATAACATCAGCTCCGAGTTCAAAGACATATAAACAAGAGACGAGAGAAGTCAGCCAAGGAGAGAAAAGTCCAAGCAATGTTGTTCAAGAAGACGCTCTCCGACCTGATGAAGAAGTGAAGTCGAGCAGTAACAACGCGTTAAATCCCCCCGAGAAAAGAACCAATGAGCCTAAAAACTACAGAGAATTTGACGCTGCATTAGCACTAACGACACTTTCATCGCGATAAAAGCCGAAGAAAGCTGAACCAAACTCTACAACTGAACATAAAAAGAACTTCCACGAAGGCAGGGCTTTCTTACCGAGTTCatagataaacaaaaaatcgacTGATAGGCTGAGAGATGCAAAAGAGTCAGTAGCTAGTGCTCAGTCAGTGTGAACAATTAAAAGTTAGTTGTAGACTAAAAAAGACCGGGTTAAACCTGTTTTCTAATCGTGTTGTATTTCAACAAAATCAAAgcgttttttttctctctcgtGTGTTTCTACTGGGTATAAAATACCAATTTTCGATGTTTTTGTTGATGTCATGTTTTAAGGAGTTAGTtgtgtgtttgttttcttagtccatgacaaaaagaaaaatagttttaaGACAATCCTGGAAGGAACTCAAAGTTCAAAACATCCAGtgctaaagttttttttttttacgaaattgaGAAGATGTTCTTGATAAAGAACAATGTCTTAGCTTTCAATGTCGAAGAAGTATTGTAAATTAGAAAGACGTGGTGTAAAGGAGATTGAATTTCCCACGACTACACCTGAAGTTTTAATTTGAAATGAGAGCTGGTTTGTAGATAGgagaaaaataacaaatagaaaataattttgaaataaaaaatgcgtCAATAGTTTTATGGTGGTCTAAAATAATCAAGGGTGGGCCCAAAATTGCCGATTTGATTACAACTTATAACGGTTTAAAGAttaacaagttttttcactGGATATAAACGTCAATAAGTTGCCGTATTATAATTTTCATTTCGCTACCGAcaactttattattttataaaatattagatctaatattcaaaacaattttggagaatttttgaaagtttttttcttttcatcgtACTCGTCCTGATTTCAAATATTGAAGGTCGGAAAGCGAGCAGAGGGATACTTTAATATAGTGAATAATCAAGCCAAAAGCACTTTGTAAACTGCATGAATAGGATGTCTAGACTTGGCATTTGAGATTAAGTCCATCGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QY61	Iroquois-class homeodomain protein IRX-4 OS=Mus musculus OX=10090 GN=Irx4 PE=2 SV=1
P78413	Iroquois-class homeodomain protein IRX-4 OS=Homo sapiens OX=9606 GN=IRX4 PE=1 SV=2
P54269	Homeobox protein caupolican OS=Drosophila melanogaster OX=7227 GN=caup PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006171 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05920 all species →	Homeobox_KN	Homeobox KN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR008422 all species →	Domain	Homeobox KN domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11211 all species →	IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0048468 all species →	Biological Process	cell development	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24889	IRX; iroquois-class homeodomain protein IRX	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.