Gene detail

Detailed information of ENSQPTP00000020858.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_048580409.1, carnitine O-palmitoyltransferase 1, liver isoform-like isoform X1 [Nematostella vectensis]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000025537

ATGGCAGAAGCCAGAGCTGCCGTTACTAGGCCCGACGTAAAGCTTCACCCCGAAGGAACAAGCGCAAAAGAGGCAGAATTTGAGCTCCTAAAGAGCACTTTTACGTCGTTGAAGAAATGCGCTTTCAGGACTCGGCAGCAAATTCGAAATGGTCTGTGGCCAACGACATGGAGTAACCTACTTGGTGCAGTCATCGTCCTCATTGGAATCATCCATTATGATCATCAACATCCTTCAGACTTATTGCAGCCTTTTACAAAAGTGGTATGGTGGCTGGGCGAACTAATCTACCTGGACGAGTCATATCCCTATAACTTCAGGGTGGTTATATTGTCTATTATCATTGGTGTCATCTTCTTTATTGTGTTACTGTATCTGCGACAGTATGTTCTACGAATGCTACTAGCCTATAGAGGCTGGATGTatgaGAATCCACGTTCACAAAGTAAACTTACTCTTTTGTGGGGTGCCATGGTTCACATATGTACTGGTCACCATCCAACGCTGTACAGCTTCCAGAACAGTCTGCCTCGTATGCCAGTACCATCGTTGAAGGACACATGTAGCAAGTTCCTTGAGTCTGTTCACCCCTTGATGGAGGATGAAGAATTTGAAGAAATGAAAGCATTGGCTAAGgattttgaaaaaaatcttgGTCCAAAGCTGCAGTTCATCCTGCAGTTGAAGTCCTGGTGGGCACCAAACTACCATACCGACTGGTGGGAGAAGTACGTATATCACATGGGACGCTCCCCTCTACCTATTAATAGTAACTACTACGGCATGGATCAAGGGTGGTACCCCACAAGGGTGCAGTCATCCAGAGCTGCAACCATGACCTACTTTTATCTGAAGTACCGCCAGGAAATAGAGACAGAAACATTACAACCGCTAGTCATTAGAAACACCATTCCAATTTGTATGCAACAGTATGAAAGAACATTCAAAACTGTCAGaaTCCCCAAGGACGACATTGACGAAGTTATTCATTTTGAACAGACAGAGAAAGAACACATTGTCGTGATCTGTAATGGTCATTACTACATGGTGCCAGTCATAAACCATGGAAAACTACTCTCCTGTCTGGACCTTGAAAGCCAATTTGATTGGATAATAGCTGATGCACAACACTCTAATGAAATCAAGAACAAACCTGAAGGGTGCATTGCAGCCCTCACAGCCCTGCCAAGAAAAGAATGGGCCGGAATAAGAAAAGCTCATTTTAGTGATGGGTTGAACAAACAGTCTCTAGAGACTATTGAAGAAGCCTTGTTTGTGgTGTGTTTGGAAGAAAAGAGTTTCTCAAATACCACAGACAGAGCGAAATACCTCATGCATGGTGATGGAACATCCTTCTGGTTTGACAAGTCATTCAACTTGTTGGTATTCAGTGACGGCAAGTGTGGTCTTAATGCCGAACACTCCTGGGCCGATGCACCTGTTATAGGGCATATGTTGGAATATGGACTTACATATGAATTCATTTATCGTACCTATAATGAAGAAGGCAGATGTGTACCTATAGGAGGGGCTCACAAGAGTGCTAACATTAGGACCCATAACCTACAAAGACCCTCCAGACTGTACTTTGACATGACTCCTCCCTTGGCCAGCAGCATTGAACATGCTCTGGAGTTTGCCCGAGCGAACAATGCCGACCTTCAACACAAAGTCGTAACCCATGATGTATTTGGAAAAggattcatcaaaaccattaaAACGAGTCCAGATGCATTTATCCAGCTGGCACTACAATTGGCCTACTACAAGGATTCTGATGGAAAACATCCCTTGACGTATGAAGCATCCATGACTAGGATGTATCTGCAGGGAAGAACTGAAACTGTTCGCAGCCTAACACAAGAGGCAAAAGATTTCGTCAGGTCCTTCATGGACAAGAGTGTCCCACGAGAAGAGGTGAAAAAGCTGTTCAAGAAAGCTGCTGATCGGCATGCCAGAAATTACAAAGACTGTATGAATGGCAAAGGCATTGACAGACACTTGTTTGCTTTGTACATTGTCAGCAAGGGACAGGGAACTGAAAGTGAGTTTCTGAAGAAGGCTCTTACTTTACCCTGGACATTATCAACCAGTCAACAACCACAGCAACAGATGGTAGCTGAGCATTTCAGTATAGCAGAACCAGAGCTCATGCACATGATCTCCCCTGGTGGGGGTTTTGGTCCAGTAACTGATGACGGGTATGGAGTCTCTTACATGGTACCAGACGACAACAGGATCTTTTTCCATGTCTCGTCAAAATTCTCCTCCAAGTTAACTAACAGTGACAGATTTGTTAATAATCTGTTTGAGAGCATGGCTGAAATGAAGGCCTTGTTTGAGAATAATCCTTAG

Transcript

ENSQPTT00000025537

gtctgattggtcagatgATTGTTTTACCAAAACATTACACACGAGCGACTTTGAACCAGAAACCGGTGAAAATATTACCGGAATTTTCTTCTAAAAAACTGCTTTTTCCTTCTCTTAAACATGGCAGAAGCCAGAGCTGCCGTTACTAGGCCCGACGTAAAGCTTCACCCCGAAGGAACAAGCGCAAAAGAGGCAGAATTTGAGCTCCTAAAGAGCACTTTTACGTCGTTGAAGAAATGCGCTTTCAGGACTCGGCAGCAAATTCGAAATGGTCTGTGGCCAACGACATGGAGTAACCTACTTGGTGCAGTCATCGTCCTCATTGGAATCATCCATTATGATCATCAACATCCTTCAGACTTATTGCAGCCTTTTACAAAAGTGGTATGGTGGCTGGGCGAACTAATCTACCTGGACGAGTCATATCCCTATAACTTCAGGGTGGTTATATTGTCTATTATCATTGGTGTCATCTTCTTTATTGTGTTACTGTATCTGCGACAGTATGTTCTACGAATGCTACTAGCCTATAGAGGCTGGATGTatgaGAATCCACGTTCACAAAGTAAACTTACTCTTTTGTGGGGTGCCATGGTTCACATATGTACTGGTCACCATCCAACGCTGTACAGCTTCCAGAACAGTCTGCCTCGTATGCCAGTACCATCGTTGAAGGACACATGTAGCAAGTTCCTTGAGTCTGTTCACCCCTTGATGGAGGATGAAGAATTTGAAGAAATGAAAGCATTGGCTAAGgattttgaaaaaaatcttgGTCCAAAGCTGCAGTTCATCCTGCAGTTGAAGTCCTGGTGGGCACCAAACTACCATACCGACTGGTGGGAGAAGTACGTATATCACATGGGACGCTCCCCTCTACCTATTAATAGTAACTACTACGGCATGGATCAAGGGTGGTACCCCACAAGGGTGCAGTCATCCAGAGCTGCAACCATGACCTACTTTTATCTGAAGTACCGCCAGGAAATAGAGACAGAAACATTACAACCGCTAGTCATTAGAAACACCATTCCAATTTGTATGCAACAGTATGAAAGAACATTCAAAACTGTCAGaaTCCCCAAGGACGACATTGACGAAGTTATTCATTTTGAACAGACAGAGAAAGAACACATTGTCGTGATCTGTAATGGTCATTACTACATGGTGCCAGTCATAAACCATGGAAAACTACTCTCCTGTCTGGACCTTGAAAGCCAATTTGATTGGATAATAGCTGATGCACAACACTCTAATGAAATCAAGAACAAACCTGAAGGGTGCATTGCAGCCCTCACAGCCCTGCCAAGAAAAGAATGGGCCGGAATAAGAAAAGCTCATTTTAGTGATGGGTTGAACAAACAGTCTCTAGAGACTATTGAAGAAGCCTTGTTTGTGgTGTGTTTGGAAGAAAAGAGTTTCTCAAATACCACAGACAGAGCGAAATACCTCATGCATGGTGATGGAACATCCTTCTGGTTTGACAAGTCATTCAACTTGTTGGTATTCAGTGACGGCAAGTGTGGTCTTAATGCCGAACACTCCTGGGCCGATGCACCTGTTATAGGGCATATGTTGGAATATGGACTTACATATGAATTCATTTATCGTACCTATAATGAAGAAGGCAGATGTGTACCTATAGGAGGGGCTCACAAGAGTGCTAACATTAGGACCCATAACCTACAAAGACCCTCCAGACTGTACTTTGACATGACTCCTCCCTTGGCCAGCAGCATTGAACATGCTCTGGAGTTTGCCCGAGCGAACAATGCCGACCTTCAACACAAAGTCGTAACCCATGATGTATTTGGAAAAggattcatcaaaaccattaaAACGAGTCCAGATGCATTTATCCAGCTGGCACTACAATTGGCCTACTACAAGGATTCTGATGGAAAACATCCCTTGACGTATGAAGCATCCATGACTAGGATGTATCTGCAGGGAAGAACTGAAACTGTTCGCAGCCTAACACAAGAGGCAAAAGATTTCGTCAGGTCCTTCATGGACAAGAGTGTCCCACGAGAAGAGGTGAAAAAGCTGTTCAAGAAAGCTGCTGATCGGCATGCCAGAAATTACAAAGACTGTATGAATGGCAAAGGCATTGACAGACACTTGTTTGCTTTGTACATTGTCAGCAAGGGACAGGGAACTGAAAGTGAGTTTCTGAAGAAGGCTCTTACTTTACCCTGGACATTATCAACCAGTCAACAACCACAGCAACAGATGGTAGCTGAGCATTTCAGTATAGCAGAACCAGAGCTCATGCACATGATCTCCCCTGGTGGGGGTTTTGGTCCAGTAACTGATGACGGGTATGGAGTCTCTTACATGGTACCAGACGACAACAGGATCTTTTTCCATGTCTCGTCAAAATTCTCCTCCAAGTTAACTAACAGTGACAGATTTGTTAATAATCTGTTTGAGAGCATGGCTGAAATGAAGGCCTTGTTTGAGAATAATCCTTAGGCTATAAAATAATTCTCACGACAAAACTAAAACGACATGAGACAAGGATTTGCTTGCTTTTGCAGGCTCGTTGCCTAATATGCATACTTCAGTCTTAATTTTATCTACTTTATCTCcataccatgtgtcattcccttgagtattatttctttctttactaggaatgcttttcagctatggtgcaatgtttacccatttcagaccatgtgtcattcccttgaatattatttttttctttactggGAATGCTTTTGCAGTTATGATGCaatgtttttcccatttcagaccatgtgtcattcccttgagtattatttctttctttactaggaatgcttttcatctatggtgcaatgtttttccatttcagaccatgtgtcattcccttgagtattatttctttctttactaggaatgcttttcagctatggtacaatgtttttcccatttcagaccatgtgtcattcccttgagcattatttctttctttgctaGGAATGCTTtaactattttatttatctttatttgCCATAAGTTTAAATTGGTATAAGATGTGAGCAGggcataattttttaatttttacaaaTAACATTGTTCTTCGGCCATTAATTTTATGGTctttatttaataatttactCTTTAATATTATGACTTTAAATCCCCCTAAGCACCCCCTCAGGAAATAGCCCACTTCCAAGATATGCTTCACCtatcacgcacaaaggtttcagtatgaggctacgtgctaaatgctcagtcattcgtgCTAGGCggtaagaataaatttaatttagcacgtagcctcata

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P32198	Carnitine O-palmitoyltransferase 1, liver isoform OS=Rattus norvegicus OX=10116 GN=Cpt1a PE=1 SV=2
P97742	Carnitine O-palmitoyltransferase 1, liver isoform OS=Mus musculus OX=10090 GN=Cpt1a PE=1 SV=4
Q68Y62	Carnitine O-palmitoyltransferase 1, liver isoform OS=Equus caballus OX=9796 GN=CPT1A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001543 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00755 all species →	Carn_acyltransf	Choline/Carnitine o-acyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000542 all species →	Family	Acyltransferase ChoActase/COT/CPT	Interproscan
IPR039551 all species →	Domain	Choline/carnitine acyltransferase domain	Interproscan
IPR023213 all species →	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan
IPR042231 all species →	Homologous_superfamily	Choline/Carnitine o-acyltransferase, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22589 all species →	CARNITINE O-ACYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004095 all species →	Molecular Function	carnitine O-palmitoyltransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0009437 all species →	Biological Process	carnitine metabolic process	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08765	CPT1A; carnitine O-palmitoyltransferase 1, liver isoform	EC:2.3.1.21	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.